Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0056 ATGTCTCTCTCCATGAAAGCTGACGTTCAAGGAAACCTTGTTGGCTCCGAGATTCATGGCTTCCATACATTGCAAGATTTGGATGTTAAAGACATCAGGGAGGAAGCAAGTGCAAGATGGCTTCGCCCAAATGAAATCCATGCAATACTATGTAACTACAAATATTTCGTCATCCATGTCAAGCCAGTGAACTTGCCCAAAAGTGGAACCATTGTACTATTTGACCGCAAGATGCTTAGGAATTTCCGCAAAGATGGACATAATTGGAAGAAAAAAAAGGACGGGAAGACAGTAAAAGAAGCACATGAACACCTAAAAGTTGGTAATGTAGAAAGGATACATGTATACTATGCCCATGGCCTAGATAACCCAACTTTTGTTCGTCGGTGTTATTGGCTCCTTGATAAGACTCTTGAACACATTGTCCTCGTTCATTACCGTCAAACACAAGAGAGTTCTCCATCCACATCTATGAATTCAAATTGTGGTTCTGTCTCTGATCCATCAACTCCTTGGCTTTTATCTGAAGAACTTGATTCCAGGGCTAATCGTGTTTATTCTGTTGGTGAAAATGAACTGTCAGAGCCTAGTGACACTACAACAGTCATGAATCATGAACAACGGCTTCATGAGATCAACACACTTGAGTGGGATGAACTTCTTGTGACAGACGTACCTTTCAAACCTGCTACTGCTATGCCTAAAGGAGACAAACTTTCATGCTTTGACCAAAAGAACCAAGTCCGAATAAACGTGGCCAACAATTTATTGGGGGACACGTCTTCATTTAATAATCCAGTTGAGTCGACTGGGAGTGCCAACAGCAATATCAGTTTCGCAGGGAATGCCTATATCCCGTTAATGGGTGGTCAAACGAATTTGAATGTAGAGAGTAGGGAATCCAATCCGATTAATTCTTTGGACAAATTGTTAAATGATGGATTGCAAAGTCAGGACAGCTTTGGACGATGGATGAATGAAGTCATCACTGACTCTTCTGGTTCAGTCATTGATCCTGCTATTGAGACATCCATTTCATCCGTTCACAATTCCTATGGTGATCCGACATTGTATCAACGTCAATCTTCTGTTATGGAGCAAATTTTTAACATAACTGATTTCTCACCTGCATGGGGCTTTTCAACAGAAAAAACAAAGATTCTAATCACGGGATATTTTCACAACGAGTACGTACATCTGGCAAAGTCCAATGTATTGGTCGTGTGTGGTGATACTAGTGTTAATGTTGATTTTGTTCAACCTGGAGTTTATCGCTGTCTGGTACAACCACATTCACCAGGACTAGTACATTTATACGTGAGCTTAGATGGCCACAAACCTATTAGTCAAGTTCTGAATTTTGAGTATCGGGCACCACTTCTACAAGAGCCTGTAGTTGCTTCAGAACAGATCCACAAGTGGGAAGAGTTTAAAGTTCAGATGCAGCTTGCTCATCTGTTGTTCTCTACATCCAAGACCCTGAGCATCATGTCGACTAAACTGTCACCCAATGCCCTGAATGAGGCCAAGAAATTAGCTGTCAGAACTTCTGACATTTCTGATAGTTGGATTTTTTTGTTGAAGTCGATTATAGAAAATAAAACTCCATTTCCACAGGCAAGAGAGGGTGTTCTTGAGATCATTTTGAGAAGCAGGTTAAGGGAATGGCTGATAGAAAGAGTTGCTGAAGGCTCAAAGAAAAGCACTGAGTTTGATGTAAATGGTCAAGGAGTAATCCATTTGTGTGCCATATTGGGATATACCTGGGCTGTACATCTATTTGTCTGGTCTGGTTTATCAATAGATTTTCGAGATAAATCTGGATGGACAGCTCTTCACTGGGCAGCTTATTATGGAAGATTGACACACCCCTCATTGATTCAAAATTTTCAGCTAAGTCAATCTTTTCATGCACATGAACATAGTTATTTCCAGTGTTTAGTTTTAAAGTTTACTTATATTGGACGGTGCTTCTGA 1977 40.47 MSLSMKADVQGNLVGSEIHGFHTLQDLDVKDIREEASARWLRPNEIHAILCNYKYFVIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGLDNPTFVRRCYWLLDKTLEHIVLVHYRQTQESSPSTSMNSNCGSVSDPSTPWLLSEELDSRANRVYSVGENELSEPSDTTTVMNHEQRLHEINTLEWDELLVTDVPFKPATAMPKGDKLSCFDQKNQVRINVANNLLGDTSSFNNPVESTGSANSNISFAGNAYIPLMGGQTNLNVESRESNPINSLDKLLNDGLQSQDSFGRWMNEVITDSSGSVIDPAIETSISSVHNSYGDPTLYQRQSSVMEQIFNITDFSPAWGFSTEKTKILITGYFHNEYVHLAKSNVLVVCGDTSVNVDFVQPGVYRCLVQPHSPGLVHLYVSLDGHKPISQVLNFEYRAPLLQEPVVASEQIHKWEEFKVQMQLAHLLFSTSKTLSIMSTKLSPNALNEAKKLAVRTSDISDSWIFLLKSIIENKTPFPQAREGVLEIILRSRLREWLIERVAEGSKKSTEFDVNGQGVIHLCAILGYTWAVHLFVWSGLSIDFRDKSGWTALHWAAYYGRLTHPSLIQNFQLSQSFHAHEHSYFQCLVLKFTYIGRCF 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 682395 693955 - Hsped.03g00560.1 Hepe03g0056 565054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0056 658 SUPERFAMILY Ankyrin repeat 569 622 IPR036770 -
Hepe03g0056 658 Gene3D - 548 629 IPR036770 -
Hepe03g0056 658 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 28 622 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Hepe03g0056 658 SUPERFAMILY E set domains 370 457 IPR014756 -
Hepe03g0056 658 Gene3D Immunoglobulins 364 460 IPR013783 -
Hepe03g0056 658 SMART CG_1_2 32 150 IPR005559 GO:0003677(InterPro)
Hepe03g0056 658 Pfam CG-1 domain 35 148 IPR005559 GO:0003677(InterPro)
Hepe03g0056 658 Pfam IPT/TIG domain 371 456 IPR002909 -
Hepe03g0056 658 CDD IPT_PCSR 370 457 - -
Hepe03g0056 658 ProSiteProfiles CG-1 DNA-binding domain profile. 29 155 IPR005559 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0056 Hepe-Chr3:682395 Hepe05g1351 Hepe-Chr5:61923193 3.79e-77 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0056 K21596 - csv:101211298 1064.29