Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0056 ATGTCTCTCTCCATGAAAGCTGACGTTCAAGGAAACCTTGTTGGCTCCGAGATTCATGGCTTCCATACATTGCAAGATTTGGATGTTAAAGACATCAGGGAGGAAGCAAGTGCAAGATGGCTTCGCCCAAATGAAATCCATGCAATACTATGTAACTACAAATATTTCGTCATCCATGTCAAGCCAGTGAACTTGCCCAAAAGTGGAACCATTGTACTATTTGACCGCAAGATGCTTAGGAATTTCCGCAAAGATGGACATAATTGGAAGAAAAAAAAGGACGGGAAGACAGTAAAAGAAGCACATGAACACCTAAAAGTTGGTAATGTAGAAAGGATACATGTATACTATGCCCATGGCCTAGATAACCCAACTTTTGTTCGTCGGTGTTATTGGCTCCTTGATAAGACTCTTGAACACATTGTCCTCGTTCATTACCGTCAAACACAAGAGAGTTCTCCATCCACATCTATGAATTCAAATTGTGGTTCTGTCTCTGATCCATCAACTCCTTGGCTTTTATCTGAAGAACTTGATTCCAGGGCTAATCGTGTTTATTCTGTTGGTGAAAATGAACTGTCAGAGCCTAGTGACACTACAACAGTCATGAATCATGAACAACGGCTTCATGAGATCAACACACTTGAGTGGGATGAACTTCTTGTGACAGACGTACCTTTCAAACCTGCTACTGCTATGCCTAAAGGAGACAAACTTTCATGCTTTGACCAAAAGAACCAAGTCCGAATAAACGTGGCCAACAATTTATTGGGGGACACGTCTTCATTTAATAATCCAGTTGAGTCGACTGGGAGTGCCAACAGCAATATCAGTTTCGCAGGGAATGCCTATATCCCGTTAATGGGTGGTCAAACGAATTTGAATGTAGAGAGTAGGGAATCCAATCCGATTAATTCTTTGGACAAATTGTTAAATGATGGATTGCAAAGTCAGGACAGCTTTGGACGATGGATGAATGAAGTCATCACTGACTCTTCTGGTTCAGTCATTGATCCTGCTATTGAGACATCCATTTCATCCGTTCACAATTCCTATGGTGATCCGACATTGTATCAACGTCAATCTTCTGTTATGGAGCAAATTTTTAACATAACTGATTTCTCACCTGCATGGGGCTTTTCAACAGAAAAAACAAAGATTCTAATCACGGGATATTTTCACAACGAGTACGTACATCTGGCAAAGTCCAATGTATTGGTCGTGTGTGGTGATACTAGTGTTAATGTTGATTTTGTTCAACCTGGAGTTTATCGCTGTCTGGTACAACCACATTCACCAGGACTAGTACATTTATACGTGAGCTTAGATGGCCACAAACCTATTAGTCAAGTTCTGAATTTTGAGTATCGGGCACCACTTCTACAAGAGCCTGTAGTTGCTTCAGAACAGATCCACAAGTGGGAAGAGTTTAAAGTTCAGATGCAGCTTGCTCATCTGTTGTTCTCTACATCCAAGACCCTGAGCATCATGTCGACTAAACTGTCACCCAATGCCCTGAATGAGGCCAAGAAATTAGCTGTCAGAACTTCTGACATTTCTGATAGTTGGATTTTTTTGTTGAAGTCGATTATAGAAAATAAAACTCCATTTCCACAGGCAAGAGAGGGTGTTCTTGAGATCATTTTGAGAAGCAGGTTAAGGGAATGGCTGATAGAAAGAGTTGCTGAAGGCTCAAAGAAAAGCACTGAGTTTGATGTAAATGGTCAAGGAGTAATCCATTTGTGTGCCATATTGGGATATACCTGGGCTGTACATCTATTTGTCTGGTCTGGTTTATCAATAGATTTTCGAGATAAATCTGGATGGACAGCTCTTCACTGGGCAGCTTATTATGGAAGATTGACACACCCCTCATTGATTCAAAATTTTCAGCTAAGTCAATCTTTTCATGCACATGAACATAGTTATTTCCAGTGTTTAGTTTTAAAGTTTACTTATATTGGACGGTGCTTCTGA 1977 40.47 MSLSMKADVQGNLVGSEIHGFHTLQDLDVKDIREEASARWLRPNEIHAILCNYKYFVIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGLDNPTFVRRCYWLLDKTLEHIVLVHYRQTQESSPSTSMNSNCGSVSDPSTPWLLSEELDSRANRVYSVGENELSEPSDTTTVMNHEQRLHEINTLEWDELLVTDVPFKPATAMPKGDKLSCFDQKNQVRINVANNLLGDTSSFNNPVESTGSANSNISFAGNAYIPLMGGQTNLNVESRESNPINSLDKLLNDGLQSQDSFGRWMNEVITDSSGSVIDPAIETSISSVHNSYGDPTLYQRQSSVMEQIFNITDFSPAWGFSTEKTKILITGYFHNEYVHLAKSNVLVVCGDTSVNVDFVQPGVYRCLVQPHSPGLVHLYVSLDGHKPISQVLNFEYRAPLLQEPVVASEQIHKWEEFKVQMQLAHLLFSTSKTLSIMSTKLSPNALNEAKKLAVRTSDISDSWIFLLKSIIENKTPFPQAREGVLEIILRSRLREWLIERVAEGSKKSTEFDVNGQGVIHLCAILGYTWAVHLFVWSGLSIDFRDKSGWTALHWAAYYGRLTHPSLIQNFQLSQSFHAHEHSYFQCLVLKFTYIGRCF 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 682395 693955 - Hsped.03g00560.1 Hepe03g0056 565054

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0056 658 SUPERFAMILY Ankyrin repeat 569 622 IPR036770 -
Hepe03g0056 658 Gene3D - 548 629 IPR036770 -
Hepe03g0056 658 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 28 622 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Hepe03g0056 658 SUPERFAMILY E set domains 370 457 IPR014756 -
Hepe03g0056 658 Gene3D Immunoglobulins 364 460 IPR013783 -
Hepe03g0056 658 SMART CG_1_2 32 150 IPR005559 GO:0003677(InterPro)
Hepe03g0056 658 Pfam CG-1 domain 35 148 IPR005559 GO:0003677(InterPro)
Hepe03g0056 658 Pfam IPT/TIG domain 371 456 IPR002909 -
Hepe03g0056 658 CDD IPT_PCSR 370 457 - -
Hepe03g0056 658 ProSiteProfiles CG-1 DNA-binding domain profile. 29 155 IPR005559 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0056 K21596 - - csv:101211298 1064.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0056 Hepe-Chr3:682395 Hepe05g1351 Hepe-Chr5:61923193 3.79e-77 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe03g1109 . 6 936 CAMTA Transcription Factor Family AT1G67310 52.1 6.1e-254 874.4
Hepe03g0056 . 34 620 CAMTA Transcription Factor Family AT3G16940 53.0 3.5e-167 585.9
Hepe03g0056 . 11 620 CAMTA Transcription Factor Family AT4G16150 53.1 4.3e-190 662.1
Hepe03g1109 . 6 936 CAMTA Transcription Factor Family AT1G67310 52.1 6.1e-254 874.4
Hepe03g0056 . 11 620 CAMTA Transcription Factor Family AT4G16150 53.1 4.3e-190 662.1
Hepe03g0056 . 34 620 CAMTA Transcription Factor Family AT3G16940 53.0 3.5e-167 585.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005047 3 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 41