Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0069 ATGTCAGCAGATGATGGGAAGAATGTTGTGATGAAGGGAGTGATTCATGGTGCTTGCGATTACCTGATCAAACCTGTTCGAATTGAAGCACTGAGAAACATATGGCAACATGTAATTCGGAAGAGAAAGACTGAATGGAAGGATTTGGAGCAATCTGGGAGTGTGGACGATGGAGATCGAGAGCAAAATCTGTCTGAAGGTGCGAATTATTCGTCTTCGGCATACGAAGGAAGTTGGAACAGCTCGAAGAGGAGGAGGGATGCGGAAGAAGAGCCCGAGGAGAGGGACGATGCATCGGCTTTAAAGAAGCCCAGGGTGGTATGGTCAGTTGAGCTCCATCAACAGTTTGTCGCCGCGGTTAATCAGCTAGGCATCGACAAGGCTGTCCCTAAAAAGATATTGGAGTTGATGAACGTTCCAGGGCTTACTAGAGAAAATGTTGCTAGTCACCTTCAGAAATATCGCTTATATCTTAGAAGGCTTAGCGGAGTATCGTCATCTCACCAATGTAATTTGAACAATTCATTTATGAACCCCCAAGACCCACCTTTTGGGTCAATGGCCTCATTCAATGGGATCGATCTTCAGACGCTTTCAGTCACCAGCCAACTCTCGCCTCAAAGTCTTGCTGCACTCCAAGCAACCGGACTTCGTAGGCCTACGGCAAAATCTAGCATATCCATGGCCCTTGATCAGAACAACATATTCAGCTTTGAAAATCCAAAATTGAGATTTGTTGAGGACCAAACACAACATATGAATAACAGTAAACCAGTAAACTTGTTTCATGGGATTCCAACAAAAATGGAGCCAAAGCAGCTTGCCAATATGTACTCTTCTGTGCAGACTCAGGGGAACATAAGCATGCAACTCAATATCAAGAGTGAACATGGTGGAACTCAACTAATGCATTTGTCTCAGCAACAAACTGGAGGACAGATTCTAAATAACAACTCTCCTGCTAGCCACTTGTCGAGAATTCCATCGACGATAAGGACGCCGATCATATCAGGTAGTATTACGAGGGGAAATGGGACTGCTGATAATAGCCAAGGACCCGGTTACAACCTAGTTTCACCAGCATCGTTGATGGTGAACTTTCCAATGAACCAAACCACAGAGTTGTCAAACAATTTTTCTCTTCAGAGCAATTCATCGGTATCTACCATGACTTGTAAAGGGGTGTTTCAAGAAGAATGTTCAGATCTAAAGGGCTCGGGCGGACTAATGTCGAGCTATGATGTTTTCAATGACTTGCATCTGCAGAAATCCCATGACTGGGATTCTCAGAATGTAAGTAGCTTGCCCTTTGGTACTTCTCACCATGGGAACTTCATACAGGATGGCTTTGATATCTCACCCTCAACCTTAATTCATCACGGTTTTCCTTCAAGCCAAACAAATGGACAAAATCAGAATTCATCAGTTGTTGGAAAGACTTTCTTTTCCTTTTCGGATGCAGCTCAACCCGAGAATGCACAAAGTATCGACCAAAACTCGCTTCTCAGTCCCGTAGAGATCAAAGCTCAGAGAATTCCTGATGCAAGCTATCAAACTGACCTCTTACCTGAGAACTTTGGCCAGGATGAACTTCTTAGTGTCTTCCTCAAACAACAACAACAAGGAGACAATGGATCGGTCGAGTTCAGCGGATACCAAACGGAGAATATTTGCGTTTAG 1680 44.11 MSADDGKNVVMKGVIHGACDYLIKPVRIEALRNIWQHVIRKRKTEWKDLEQSGSVDDGDREQNLSEGANYSSSAYEGSWNSSKRRRDAEEEPEERDDASALKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSSSHQCNLNNSFMNPQDPPFGSMASFNGIDLQTLSVTSQLSPQSLAALQATGLRRPTAKSSISMALDQNNIFSFENPKLRFVEDQTQHMNNSKPVNLFHGIPTKMEPKQLANMYSSVQTQGNISMQLNIKSEHGGTQLMHLSQQQTGGQILNNNSPASHLSRIPSTIRTPIISGSITRGNGTADNSQGPGYNLVSPASLMVNFPMNQTTELSNNFSLQSNSSVSTMTCKGVFQEECSDLKGSGGLMSSYDVFNDLHLQKSHDWDSQNVSSLPFGTSHHGNFIQDGFDISPSTLIHHGFPSSQTNGQNQNSSVVGKTFFSFSDAAQPENAQSIDQNSLLSPVEIKAQRIPDASYQTDLLPENFGQDELLSVFLKQQQQGDNGSVEFSGYQTENICV 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 842176 847108 - Hsped.03g00690.1 Hepe03g0069 565067

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0069 559 Pfam Myb-like DNA-binding domain 105 155 IPR001005 -
Hepe03g0069 559 ProSiteProfiles Response regulatory domain profile. 1 39 IPR001789 GO:0000160(InterPro)
Hepe03g0069 559 NCBIfam myb-like DNA-binding domain, SHAQKYF class 103 156 IPR006447 GO:0003677(InterPro)
Hepe03g0069 559 Gene3D - 100 162 - -
Hepe03g0069 559 MobiDBLite consensus disorder prediction 64 79 - -
Hepe03g0069 559 MobiDBLite consensus disorder prediction 80 100 - -
Hepe03g0069 559 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 159 IPR017930 -
Hepe03g0069 559 FunFam Two-component response regulator 99 162 - -
Hepe03g0069 559 Gene3D - 1 57 - -
Hepe03g0069 559 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 59 444 IPR044841 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Hepe03g0069 559 MobiDBLite consensus disorder prediction 46 100 - -
Hepe03g0069 559 MobiDBLite consensus disorder prediction 46 63 - -
Hepe03g0069 559 SUPERFAMILY Homeodomain-like 101 160 IPR009057 -
Hepe03g0069 559 SUPERFAMILY CheY-like 1 46 IPR011006 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0069 K14491 - - csv:101210138 963.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0069 Hepe-Chr3:842176 Hepe10g0068 Hepe-Chr10:662676 4.68e-40 dispersed
Hepe03g0489 Hepe-Chr3:7604627 Hepe03g0069 Hepe-Chr3:842176 3.44e-22 transposed
Hepe03g0069 Hepe-Chr3:842176 Hepe03g1866 Hepe-Chr3:75645452 9.75e-14 wgd
Hepe03g0069 Hepe-Chr3:842176 Hepe05g1404 Hepe-Chr5:62906870 2.00e-198 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g0595 . 59 385 Response Regulator Gene Family AT3G16857 52.3 2.8e-60 230.3
Hepe10g0068 . 52 256 Response Regulator Gene Family AT3G16857 52.4 4.3e-53 206.5
Hepe08g2484 . 17 338 Response Regulator Gene Family AT4G31920 57.1 1.5e-81 300.8
Hepe05g1404 . 16 271 Response Regulator Gene Family AT4G31920 53.7 5.0e-69 259.2
Hepe10g0068 . 11 259 Response Regulator Gene Family AT4G31920 51.6 1.8e-63 240.7
Hepe01g1979 . 93 257 Response Regulator Gene Family AT1G67710 54.7 6.1e-41 165.6
Hepe05g1404 . 99 262 Response Regulator Gene Family AT1G67710 55.3 5.2e-40 162.5
Hepe03g0069 . 1 161 Response Regulator Gene Family AT1G67710 52.7 6.3e-38 155.6
Hepe09g0595 . 16 390 Response Regulator Gene Family AT2G25180 53.3 7.8e-92 335.1
Hepe08g2484 . 17 348 Response Regulator Gene Family AT2G25180 56.5 6.2e-89 325.5
Hepe05g1404 . 8 291 Response Regulator Gene Family AT2G25180 54.7 3.2e-77 286.6
Hepe10g0068 . 11 256 Response Regulator Gene Family AT2G25180 55.6 2.7e-68 256.9
Hepe10g0068 . 72 259 Response Regulator Gene Family AT2G01760 50.5 4.5e-46 182.2
Hepe08g2484 . 79 278 Response Regulator Gene Family AT2G01760 50.7 2.4e-39 159.8
Hepe10g0068 . 9 258 Response Regulator Gene Family AT5G58080 50.6 1.2e-61 235.0
Hepe05g1404 . 18 242 Response Regulator Gene Family AT4G16110 67.8 9.9e-80 295.0
Hepe01g1979 . 11 235 Response Regulator Gene Family AT4G16110 59.1 1.6e-61 234.6
Hepe10g0068 . 10 235 Response Regulator Gene Family AT4G16110 54.4 9.6e-59 225.3
Hepe08g2484 . 18 264 Response Regulator Gene Family AT4G16110 54.8 1.9e-54 211.1
Hepe09g0595 . 17 249 Response Regulator Gene Family AT4G16110 64.1 3.2e-54 210.3
Hepe03g0069 . 1 141 Response Regulator Gene Family AT4G16110 56.4 1.8e-36 151.4
Hepe09g0164 . 15 175 Response Regulator Gene Family AT3G48100 69.3 7.6e-54 207.2
Hepe10g1680 . 30 189 Response Regulator Gene Family AT3G48100 54.9 7.3e-41 164.1
Hepe02g2525 . 213 353 Response Regulator Gene Family AT3G48100 60.3 9.6e-41 163.7
Hepe05g0710 . 4 149 Response Regulator Gene Family AT3G48100 56.2 1.6e-40 162.9
Hepe04g0485 . 9 158 Response Regulator Gene Family AT3G48100 56.0 2.1e-40 162.5
Hepe01g0986 . 2 180 Response Regulator Gene Family AT3G48100 51.4 2.4e-39 159.1
Hepe02g2242 . 19 163 Response Regulator Gene Family AT3G48100 56.2 5.8e-38 154.5
Hepe09g0164 . 28 169 Response Regulator Gene Family AT1G59940 65.8 4.4e-49 192.2
Hepe10g1680 . 24 206 Response Regulator Gene Family AT1G59940 56.5 2.9e-48 189.5
Hepe02g2525 . 172 350 Response Regulator Gene Family AT1G59940 55.5 8.1e-43 171.4
Hepe05g0710 . 10 149 Response Regulator Gene Family AT1G59940 59.3 1.7e-40 163.7
Hepe01g0637 . 18 149 Response Regulator Gene Family AT1G59940 62.1 4.1e-39 159.1
Hepe04g0485 . 11 156 Response Regulator Gene Family AT1G59940 54.8 3.5e-38 156.0
Hepe01g0986 . 12 152 Response Regulator Gene Family AT1G59940 60.3 4.6e-38 155.6
Hepe02g2242 . 19 161 Response Regulator Gene Family AT1G59940 54.9 1.7e-37 153.7
Hepe09g0164 . 30 169 Response Regulator Gene Family AT1G10470 69.9 2.6e-49 192.6
Hepe10g1680 . 24 222 Response Regulator Gene Family AT1G10470 55.4 1.7e-48 189.9
Hepe02g2525 . 207 350 Response Regulator Gene Family AT1G10470 59.0 1.7e-40 163.3
Hepe05g0710 . 12 149 Response Regulator Gene Family AT1G10470 60.1 2.2e-40 162.9
Hepe04g0485 . 17 156 Response Regulator Gene Family AT1G10470 59.3 4.1e-39 158.7
Hepe01g0637 . 20 149 Response Regulator Gene Family AT1G10470 61.5 1.0e-37 154.1
Hepe02g2242 . 19 161 Response Regulator Gene Family AT1G10470 55.6 2.3e-37 152.9
Hepe09g0164 . 15 175 Response Regulator Gene Family AT3G48100 69.3 7.6e-54 207.2
Hepe10g1680 . 30 189 Response Regulator Gene Family AT3G48100 54.9 7.3e-41 164.1
Hepe02g2525 . 213 353 Response Regulator Gene Family AT3G48100 60.3 9.6e-41 163.7
Hepe05g0710 . 4 149 Response Regulator Gene Family AT3G48100 56.2 1.6e-40 162.9
Hepe04g0485 . 9 158 Response Regulator Gene Family AT3G48100 56.0 2.1e-40 162.5
Hepe01g0986 . 2 180 Response Regulator Gene Family AT3G48100 51.4 2.4e-39 159.1
Hepe02g2242 . 19 163 Response Regulator Gene Family AT3G48100 56.2 5.8e-38 154.5
Hepe09g0164 . 26 178 Response Regulator Gene Family AT5G62920 73.2 5.9e-54 207.6
Hepe10g1680 . 26 206 Response Regulator Gene Family AT5G62920 53.8 2.3e-42 169.1
Hepe02g2525 . 213 349 Response Regulator Gene Family AT5G62920 60.6 3.7e-40 161.8
Hepe05g0710 . 12 149 Response Regulator Gene Family AT5G62920 58.7 3.7e-40 161.8
Hepe04g0485 . 12 158 Response Regulator Gene Family AT5G62920 55.8 8.2e-40 160.6
Hepe02g2242 . 19 159 Response Regulator Gene Family AT5G62920 57.0 2.9e-37 152.1
Hepe09g0164 . 30 162 Response Regulator Gene Family AT1G19050 77.4 6.1e-52 201.1
Hepe02g2525 . 191 352 Response Regulator Gene Family AT1G19050 52.5 5.3e-40 161.4
Hepe05g0710 . 10 151 Response Regulator Gene Family AT1G19050 55.6 7.7e-39 157.5
Hepe04g0485 . 11 158 Response Regulator Gene Family AT1G19050 54.1 1.7e-38 156.4
Hepe01g0986 . 12 157 Response Regulator Gene Family AT1G19050 56.2 3.8e-38 155.2
Hepe01g0637 . 20 150 Response Regulator Gene Family AT1G19050 58.8 7.2e-37 151.0
Hepe05g0710 . 3 153 Response Regulator Gene Family AT2G41310 74.8 1.4e-57 219.9
Hepe04g0485 . 8 272 Response Regulator Gene Family AT2G41310 50.9 1.2e-56 216.9
Hepe02g2525 . 203 351 Response Regulator Gene Family AT2G41310 66.4 2.1e-50 196.1
Hepe01g0986 . 6 183 Response Regulator Gene Family AT2G41310 50.2 4.4e-48 188.3
Hepe02g2242 . 11 160 Response Regulator Gene Family AT2G41310 59.2 1.0e-44 177.2
Hepe01g0637 . 12 150 Response Regulator Gene Family AT2G41310 56.9 2.6e-40 162.5
Hepe09g0164 . 30 160 Response Regulator Gene Family AT2G41310 61.9 4.5e-40 161.8
Hepe04g0485 . 8 272 Response Regulator Gene Family AT3G57040 52.1 1.4e-60 229.9
Hepe05g0710 . 3 155 Response Regulator Gene Family AT3G57040 75.8 1.4e-60 229.9
Hepe02g2525 . 210 351 Response Regulator Gene Family AT3G57040 68.1 6.4e-50 194.5
Hepe01g0986 . 7 156 Response Regulator Gene Family AT3G57040 68.4 1.1e-49 193.7
Hepe02g2242 . 15 160 Response Regulator Gene Family AT3G57040 61.9 9.6e-46 180.6
Hepe09g0164 . 23 160 Response Regulator Gene Family AT3G57040 58.1 3.2e-41 165.6
Hepe01g0637 . 18 150 Response Regulator Gene Family AT3G57040 57.1 1.0e-39 160.6
Hepe09g0164 . 16 178 Response Regulator Gene Family AT1G74890 69.3 1.7e-54 209.5
Hepe02g2525 . 211 344 Response Regulator Gene Family AT1G74890 61.2 7.0e-40 161.0
Hepe01g0986 . 8 157 Response Regulator Gene Family AT1G74890 58.0 1.2e-39 160.2
Hepe04g0485 . 12 151 Response Regulator Gene Family AT1G74890 58.6 4.5e-39 158.3
Hepe05g0710 . 10 149 Response Regulator Gene Family AT1G74890 58.6 7.7e-39 157.5
Hepe01g0637 . 20 146 Response Regulator Gene Family AT1G74890 60.6 2.5e-37 152.5
Hepe01g0637 . 20 151 Response Regulator Gene Family AT2G40670 68.4 1.4e-46 183.0
Hepe05g0710 . 8 149 Response Regulator Gene Family AT2G40670 57.3 1.5e-40 162.9
Hepe09g0164 . 23 160 Response Regulator Gene Family AT2G40670 59.9 6.2e-39 157.5
Hepe04g0485 . 13 158 Response Regulator Gene Family AT2G40670 51.7 7.5e-37 150.6
Hepe01g0637 . 3 151 Response Regulator Gene Family AT3G56380 66.0 6.8e-48 187.2
Hepe09g0164 . 17 160 Response Regulator Gene Family AT3G56380 59.6 1.4e-40 162.9
Hepe05g0710 . 8 149 Response Regulator Gene Family AT3G56380 54.5 1.3e-38 156.4
Hepe04g0485 . 2 158 Response Regulator Gene Family AT3G56380 53.2 2.2e-38 155.6
Hepe02g2242 . 11 157 Response Regulator Gene Family AT3G56380 52.3 4.1e-37 151.4
Hepe01g0986 . 6 147 Response Regulator Gene Family AT3G56380 54.5 9.2e-37 150.2
Hepe02g2525 . 211 352 Response Regulator Gene Family AT3G56380 54.5 9.2e-37 150.2
Hepe09g0595 . 59 385 Response Regulator Gene Family AT3G16857 52.3 2.8e-60 230.3
Hepe10g0068 . 52 256 Response Regulator Gene Family AT3G16857 52.4 4.3e-53 206.5
Hepe05g1404 . 18 242 Response Regulator Gene Family AT4G16110 67.8 9.9e-80 295.0
Hepe01g1979 . 11 235 Response Regulator Gene Family AT4G16110 59.1 1.6e-61 234.6
Hepe10g0068 . 10 235 Response Regulator Gene Family AT4G16110 54.4 9.6e-59 225.3
Hepe08g2484 . 18 264 Response Regulator Gene Family AT4G16110 54.8 1.9e-54 211.1
Hepe09g0595 . 17 249 Response Regulator Gene Family AT4G16110 64.1 3.2e-54 210.3
Hepe03g0069 . 1 141 Response Regulator Gene Family AT4G16110 56.4 1.8e-36 151.4
Hepe08g2484 . 17 338 Response Regulator Gene Family AT4G31920 57.1 1.5e-81 300.8
Hepe05g1404 . 16 271 Response Regulator Gene Family AT4G31920 53.7 5.0e-69 259.2
Hepe10g0068 . 11 259 Response Regulator Gene Family AT4G31920 51.6 1.8e-63 240.7
Hepe01g1979 . 93 257 Response Regulator Gene Family AT1G67710 54.7 6.1e-41 165.6
Hepe05g1404 . 99 262 Response Regulator Gene Family AT1G67710 55.3 5.2e-40 162.5
Hepe03g0069 . 1 161 Response Regulator Gene Family AT1G67710 52.7 6.3e-38 155.6
Hepe09g0595 . 16 390 Response Regulator Gene Family AT2G25180 53.3 7.8e-92 335.1
Hepe08g2484 . 17 348 Response Regulator Gene Family AT2G25180 56.5 6.2e-89 325.5
Hepe05g1404 . 8 291 Response Regulator Gene Family AT2G25180 54.7 3.2e-77 286.6
Hepe10g0068 . 11 256 Response Regulator Gene Family AT2G25180 55.6 2.7e-68 256.9
Hepe10g0068 . 72 259 Response Regulator Gene Family AT2G01760 50.5 4.5e-46 182.2
Hepe08g2484 . 79 278 Response Regulator Gene Family AT2G01760 50.7 2.4e-39 159.8
Hepe10g0068 . 9 258 Response Regulator Gene Family AT5G58080 50.6 1.2e-61 235.0
Hepe09g0102 . 23 210 Response Regulator Gene Family AT5G61380 76.7 9.6e-77 285.0
Hepe07g2494 . 24 129 Response Regulator Gene Family AT5G61380 73.6 2.2e-36 151.0
Hepe04g0907 . 69 206 Response Regulator Gene Family AT5G60100 76.8 2.9e-53 206.5
Hepe06g0835 . 45 182 Response Regulator Gene Family AT5G60100 60.9 1.9e-44 177.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001295 2 3 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55194 PF00249 Myb_DNA-binding 5.20E-08 CL0123 Hepe TF