Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0069 ATGTCAGCAGATGATGGGAAGAATGTTGTGATGAAGGGAGTGATTCATGGTGCTTGCGATTACCTGATCAAACCTGTTCGAATTGAAGCACTGAGAAACATATGGCAACATGTAATTCGGAAGAGAAAGACTGAATGGAAGGATTTGGAGCAATCTGGGAGTGTGGACGATGGAGATCGAGAGCAAAATCTGTCTGAAGGTGCGAATTATTCGTCTTCGGCATACGAAGGAAGTTGGAACAGCTCGAAGAGGAGGAGGGATGCGGAAGAAGAGCCCGAGGAGAGGGACGATGCATCGGCTTTAAAGAAGCCCAGGGTGGTATGGTCAGTTGAGCTCCATCAACAGTTTGTCGCCGCGGTTAATCAGCTAGGCATCGACAAGGCTGTCCCTAAAAAGATATTGGAGTTGATGAACGTTCCAGGGCTTACTAGAGAAAATGTTGCTAGTCACCTTCAGAAATATCGCTTATATCTTAGAAGGCTTAGCGGAGTATCGTCATCTCACCAATGTAATTTGAACAATTCATTTATGAACCCCCAAGACCCACCTTTTGGGTCAATGGCCTCATTCAATGGGATCGATCTTCAGACGCTTTCAGTCACCAGCCAACTCTCGCCTCAAAGTCTTGCTGCACTCCAAGCAACCGGACTTCGTAGGCCTACGGCAAAATCTAGCATATCCATGGCCCTTGATCAGAACAACATATTCAGCTTTGAAAATCCAAAATTGAGATTTGTTGAGGACCAAACACAACATATGAATAACAGTAAACCAGTAAACTTGTTTCATGGGATTCCAACAAAAATGGAGCCAAAGCAGCTTGCCAATATGTACTCTTCTGTGCAGACTCAGGGGAACATAAGCATGCAACTCAATATCAAGAGTGAACATGGTGGAACTCAACTAATGCATTTGTCTCAGCAACAAACTGGAGGACAGATTCTAAATAACAACTCTCCTGCTAGCCACTTGTCGAGAATTCCATCGACGATAAGGACGCCGATCATATCAGGTAGTATTACGAGGGGAAATGGGACTGCTGATAATAGCCAAGGACCCGGTTACAACCTAGTTTCACCAGCATCGTTGATGGTGAACTTTCCAATGAACCAAACCACAGAGTTGTCAAACAATTTTTCTCTTCAGAGCAATTCATCGGTATCTACCATGACTTGTAAAGGGGTGTTTCAAGAAGAATGTTCAGATCTAAAGGGCTCGGGCGGACTAATGTCGAGCTATGATGTTTTCAATGACTTGCATCTGCAGAAATCCCATGACTGGGATTCTCAGAATGTAAGTAGCTTGCCCTTTGGTACTTCTCACCATGGGAACTTCATACAGGATGGCTTTGATATCTCACCCTCAACCTTAATTCATCACGGTTTTCCTTCAAGCCAAACAAATGGACAAAATCAGAATTCATCAGTTGTTGGAAAGACTTTCTTTTCCTTTTCGGATGCAGCTCAACCCGAGAATGCACAAAGTATCGACCAAAACTCGCTTCTCAGTCCCGTAGAGATCAAAGCTCAGAGAATTCCTGATGCAAGCTATCAAACTGACCTCTTACCTGAGAACTTTGGCCAGGATGAACTTCTTAGTGTCTTCCTCAAACAACAACAACAAGGAGACAATGGATCGGTCGAGTTCAGCGGATACCAAACGGAGAATATTTGCGTTTAG 1680 44.11 MSADDGKNVVMKGVIHGACDYLIKPVRIEALRNIWQHVIRKRKTEWKDLEQSGSVDDGDREQNLSEGANYSSSAYEGSWNSSKRRRDAEEEPEERDDASALKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSSSHQCNLNNSFMNPQDPPFGSMASFNGIDLQTLSVTSQLSPQSLAALQATGLRRPTAKSSISMALDQNNIFSFENPKLRFVEDQTQHMNNSKPVNLFHGIPTKMEPKQLANMYSSVQTQGNISMQLNIKSEHGGTQLMHLSQQQTGGQILNNNSPASHLSRIPSTIRTPIISGSITRGNGTADNSQGPGYNLVSPASLMVNFPMNQTTELSNNFSLQSNSSVSTMTCKGVFQEECSDLKGSGGLMSSYDVFNDLHLQKSHDWDSQNVSSLPFGTSHHGNFIQDGFDISPSTLIHHGFPSSQTNGQNQNSSVVGKTFFSFSDAAQPENAQSIDQNSLLSPVEIKAQRIPDASYQTDLLPENFGQDELLSVFLKQQQQGDNGSVEFSGYQTENICV 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 842176 847108 - Hsped.03g00690.1 Hepe03g0069 565067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0069 559 Pfam Myb-like DNA-binding domain 105 155 IPR001005 -
Hepe03g0069 559 ProSiteProfiles Response regulatory domain profile. 1 39 IPR001789 GO:0000160(InterPro)
Hepe03g0069 559 NCBIfam myb-like DNA-binding domain, SHAQKYF class 103 156 IPR006447 GO:0003677(InterPro)
Hepe03g0069 559 Gene3D - 100 162 - -
Hepe03g0069 559 MobiDBLite consensus disorder prediction 64 79 - -
Hepe03g0069 559 MobiDBLite consensus disorder prediction 80 100 - -
Hepe03g0069 559 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 159 IPR017930 -
Hepe03g0069 559 FunFam Two-component response regulator 99 162 - -
Hepe03g0069 559 Gene3D - 1 57 - -
Hepe03g0069 559 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 59 444 IPR044841 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Hepe03g0069 559 MobiDBLite consensus disorder prediction 46 100 - -
Hepe03g0069 559 MobiDBLite consensus disorder prediction 46 63 - -
Hepe03g0069 559 SUPERFAMILY Homeodomain-like 101 160 IPR009057 -
Hepe03g0069 559 SUPERFAMILY CheY-like 1 46 IPR011006 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0069 Hepe-Chr3:842176 Hepe10g0068 Hepe-Chr10:662676 4.68e-40 dispersed
Hepe03g0489 Hepe-Chr3:7604627 Hepe03g0069 Hepe-Chr3:842176 3.44e-22 transposed
Hepe03g0069 Hepe-Chr3:842176 Hepe03g1866 Hepe-Chr3:75645452 9.75e-14 wgd
Hepe03g0069 Hepe-Chr3:842176 Hepe05g1404 Hepe-Chr5:62906870 2.00e-198 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55194 PF00249 Myb_DNA-binding 5.20E-08 CL0123 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0069 K14491 - csv:101210138 963.37