Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0083 ATGGTCGTCGCCGTTGCTGTCGGTGTCAACAGCTCACCCAACGAAGCGCACGGCGACAGTACTACCAGTGATACTCACGGTGACAGTCACGGTGAGGAAGCCGGGGAAATTTCATCAACGACAAAAGCCGTTAAAGCCATTTGTCAACCAACCGATTACAAAGAAACCTGCGAGAAGAGCTTAATGACGGAAGCTGGTAACACAACAGACCCTAGAGAGCTAGTAAAAATTGGCTTCAGAGTTGCCAAGAAACATCTAAATGCGGCGATTAGAAATTCCACCACACTTAAAGAACTTGCCAAAGATCCAAGAACCAACCAAGCCCTTCAGAACTGCCGCGAGCTTATAGAATACGCCATCGACGATCTAACCGAATCGTTCGACCGAATTGGCACCTTTGAAATAACGAAACTCGATGAGTTCGTCAACGATTTAAAGATCTGGCTGAGTGGGGCCCTCACGTACGAACAAACTTGTTTGGACGGATTCGAAAACACCACCGGTGATGCCGGTGTTAGAATGCAGAAGTTTTTAAAGTCGTCTCAAGAAATGACGAGTAACGGTCTTGCGATTGTTTCTGAATTGTCGTCCATGTTGGGGCTACTTAACATTCCAGGACTGTCTTCACGTCGACTGTTGGAGGACGACGGAGATTTGCCGTCGTGGGTGAGCGAAGGAAATAGAGAGCTGATGCAGGCGGGGACAACGCAGATTAAGCCGAATGTGGTGGTGGCTCAAGATGGAAGTGGGAAGTACAAGACTATAAATGAAGCGTTGGTTAATGCACCGAAGAAAAGTAATATAACATTTGTGATTTATGTGAAGGCTGGAATTTATAAGGAAATTGTCCTTATTCCAAAGGCTTTGACTCATATTACCATGTACGGTGACGGCCCCACCAAAACTGTCGTTACCGGTAATTTAAACTTTATCGATGGTATCCAAACTTTCAAGACCTCCACCTTTTCGGTGGTCGGATCCAATTTCTTCTGTCGGGACATGGGGTTCGTGAACAGCGCCGGAGCAGCAAAGCATCAAGCTGTAGCACTTCGAGTTCAATCTGACCGATCCGTCTTCTACAATTGTCAAATGGACGGATATCAAGACACTCTCTACGTCCAAGCCCATCGTCAATTCTATCGCGATTGCTCAATCAGTGGCACCATTGACTTCGTCTTTGGTAACTCCGCTGCCATCTTCCAGAACTGCAAACTAATCGTCCGAAAGCCACTCGAAAACCAACAATGCATCGTCACGGCTCAAGGCCGGATGGACCGCCGCGAACCGACGGCCCTAATCTTCCAAAACTGCCACTTCATGGGCGACCCGAGTTACTTGCCCTTCAAGGCAGTGAACAAAGCCTATTTGGGTCGGCCATGGAAGCAATATTCACGAACCATCATAATGGGTTCTGAAATCGACGATTTAATCCAGCCGGAAGGATGGTTGCCGTGGATGGGGACTTTTGGACTAAACACATTGTTCTACGCCGAGTTTCAGAACAGAGGTCCAGGCGCGGATTTGAGCAAGAGGGTGAAGTGGCGAGGAATTAAAACGATTACGCCTCAGCATGCCGCGGATTTCACTCCGAGGAGGTTTATTGAGGGCGATTCTTGGATTAAACCCAAGGGAATTCCATATGCTTCTGCAATGATGTAA 1659 47.68 MVVAVAVGVNSSPNEAHGDSTTSDTHGDSHGEEAGEISSTTKAVKAICQPTDYKETCEKSLMTEAGNTTDPRELVKIGFRVAKKHLNAAIRNSTTLKELAKDPRTNQALQNCRELIEYAIDDLTESFDRIGTFEITKLDEFVNDLKIWLSGALTYEQTCLDGFENTTGDAGVRMQKFLKSSQEMTSNGLAIVSELSSMLGLLNIPGLSSRRLLEDDGDLPSWVSEGNRELMQAGTTQIKPNVVVAQDGSGKYKTINEALVNAPKKSNITFVIYVKAGIYKEIVLIPKALTHITMYGDGPTKTVVTGNLNFIDGIQTFKTSTFSVVGSNFFCRDMGFVNSAGAAKHQAVALRVQSDRSVFYNCQMDGYQDTLYVQAHRQFYRDCSISGTIDFVFGNSAAIFQNCKLIVRKPLENQQCIVTAQGRMDRREPTALIFQNCHFMGDPSYLPFKAVNKAYLGRPWKQYSRTIIMGSEIDDLIQPEGWLPWMGTFGLNTLFYAEFQNRGPGADLSKRVKWRGIKTITPQHAADFTPRRFIEGDSWIKPKGIPYASAMM 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 987414 989157 + Hsped.03g00830.1 Hepe03g0083 565081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0083 552 FunFam Pectinesterase 235 551 - -
Hepe03g0083 552 SMART PMEI_2 39 191 IPR006501 GO:0004857(InterPro)
Hepe03g0083 552 MobiDBLite consensus disorder prediction 1 41 - -
Hepe03g0083 552 Gene3D - 235 551 IPR012334 -
Hepe03g0083 552 Pfam Plant invertase/pectin methylesterase inhibitor 43 191 IPR006501 GO:0004857(InterPro)
Hepe03g0083 552 CDD PMEI-like_3 46 197 - -
Hepe03g0083 552 PANTHER PECTINESTERASE 5 542 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Hepe03g0083 552 Pfam Pectinesterase 241 537 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Hepe03g0083 552 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 196 IPR035513 -
Hepe03g0083 552 SUPERFAMILY Pectin lyase-like 236 548 IPR011050 -
Hepe03g0083 552 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Hepe03g0083 552 MobiDBLite consensus disorder prediction 21 35 - -
Hepe03g0083 552 ProSitePatterns Pectinesterase signature 1. 266 285 IPR018040 -
Hepe03g0083 552 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 196 IPR035513 -
Hepe03g0083 552 NCBIfam pectinesterase inhibitor domain 40 195 IPR006501 GO:0004857(InterPro)
Hepe03g0083 552 FunFam Pectinesterase 40 196 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0083 Hepe-Chr3:987414 Hepe03g0087 Hepe-Chr3:1029541 0.0 dispersed
Hepe03g0083 Hepe-Chr3:987414 Hepe03g0084 Hepe-Chr3:992779 0.0 tandem
Hepe03g0083 Hepe-Chr3:987414 Hepe03g1874 Hepe-Chr3:75735245 2.26e-106 wgd
Hepe03g0083 Hepe-Chr3:987414 Hepe05g1418 Hepe-Chr5:63126448 1.76e-249 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0083 K01051 - csv:101221958 899.427