Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0085 ATGTCGAACGGATTTGAGAATGCCGAAGTTGATACGAAGAAGAAAAAATTTGCCATCCTAGGCATCTCTTCTCTATTCCTCGTGGCCATGGTCGTCGCCGTTACCGTCGGTGTCAACAGCTCACCCCACAATGATAAGCATGCCGACGGAGCCGGAGAAATTTCGTCAAGCACAAAAGCCGTCCAATCCATTTGTCAACCAACTGATTACAAAGAAACTTGCGAGAAGAGCTTAATGTCAGAGGGTAGTAACACGACAGACCCAAAAGAGCTAGCAAAAATTGGCATCAAAGTCGCCATGGAACAACTACACGCGGCAATTAGAAATTCCACTACGCTCCAAGAACTTGCCAAAGAACCACGTACTAATCAAGCCCTTCAAAACTGTCGTGAGCTTCTAGAATATGCCATTGACGATCTAACCAATTCGTTCGAACGAATCGGCACCTTTGAAATGGCAAAACTTGACAAGTTTGTCGACGATTTAAAAATTTGGCTGAGTGCGGCCCTCACGTACGAACAAACTTGTTTGGACGGATTTGAAAACACCACCGGTGATGCTGGTGTTAGAATGCAAGAGTTTTTAAAGTCGGCTCAAGAAATGACGAGTAACGGCCTTGCGATTGTTACTGAATTGTCGTCCATGTTGGTTCAGATGTCAGGAATGGCTGCGCCTGCACGACGACTGTTGGACGATGGAGATATGCCGTCGTGGGTGAGCGGCGGAAAGAGGCGGTTGATGCAGGTGGCGACGGCGGCGATTAAGCCGGACGTGGTGGTGGCTCAGGATGGAAGTGGGCAATACAAGACTATAAATGAGGCTTTGGTTAATGTACCGAAGAAGAGTAATATAACATTTGTGATTTATGTGAAGGCTGGAATTTATAAGGAAATTGTCCTTATTCCAAAGGCTTTGACTCATGTTACCATGTACGGAGATGGCCCCACCAAAACCGTCGTTACCGGTAATTTGAACTTTATCGATGGTATCCAAACTTTCAAGACCGCAACCTTCGCGGTGGTCGGAGCAAATTTCTTTTGCCGAGACATGGGGTTCGAGAATAGCGCCGGAGCGGCGAAGCACCAAGCTGTAGCACTTCGAGTCCAATCCGATAGATCGATCTTCTACAATTGCCAAATGGACGCATACCAAGACACTCTGTACGCCCAAACCCACCGTCAATTCTATCGGGATTGCACAATCAGCGGCACCATCGACTTCGTGTTCGGTGACTCCGCAGCCGTCTTCCAGAACTGCAAATTAGTAGTCCGAAAGCCAATGGATAACCAACAATGCATCGTGACGGCTCAAGGGCGACTGGAAGAACGGATGTCGACCGGCCTAATCTTCCAAAACTGCCACTTCATGGGCGACCCGGCTTACTTGCCGTTCAAGGCGGTGAACAAAGCGTATTTGGGTCGGCCATGGAAGCAATATTCACGAACCATCATAATGGGTTCTCAAATTGACGATATAATCGAGCCTGAGGGATGGTTGCCGTGGATGGGCGATTTTGCTCTGAACACTTTGTTCTACGCGGAACTTCAGAACAAAGGAGCCGGAGCTGATCTGAGCAAGAGGGTTAAGTGGCTAGGAATTAAAACTATTACGCCTCAGCAGGCTCTCGATTTCACTCCCAACATTTTTATCGACGGCGATGATTGGATTAAAGCCAAGGGAATTCCATACGCTTCCGCAATGATAATCCTTCATTTGCATTCTCTCGAATTCCCTCACCAAGTTCAACACTTTCATGCCCTTGATCCTCTCATCACCTTCATACTCACCTTTGAGGAAGTCCCAAATCTACTTTGTTGGGCCATAATTCTGTTGAATATGGATGAAGACACAACTGCATATAGGCAAGCTCTAGCCTTTGCCTTCTTGGTGACCCTCTCCTTAATCCTTCATTTGCATTCTCTTGAATTCCCTCACCTGCCCTTGATCCTCTCATCATCTTCATACTCACCTTTGAGGAAGTCTCAAATCTTCTTTGCTGACTTCAAGGCCATATGGATGAAGACACAACTGCATATAATAGGCATTCTGATAGCCCATGCTTTCTTGAATTCCCTCACCTGCCCTTGA 2088 46.93 MSNGFENAEVDTKKKKFAILGISSLFLVAMVVAVTVGVNSSPHNDKHADGAGEISSSTKAVQSICQPTDYKETCEKSLMSEGSNTTDPKELAKIGIKVAMEQLHAAIRNSTTLQELAKEPRTNQALQNCRELLEYAIDDLTNSFERIGTFEMAKLDKFVDDLKIWLSAALTYEQTCLDGFENTTGDAGVRMQEFLKSAQEMTSNGLAIVTELSSMLVQMSGMAAPARRLLDDGDMPSWVSGGKRRLMQVATAAIKPDVVVAQDGSGQYKTINEALVNVPKKSNITFVIYVKAGIYKEIVLIPKALTHVTMYGDGPTKTVVTGNLNFIDGIQTFKTATFAVVGANFFCRDMGFENSAGAAKHQAVALRVQSDRSIFYNCQMDAYQDTLYAQTHRQFYRDCTISGTIDFVFGDSAAVFQNCKLVVRKPMDNQQCIVTAQGRLEERMSTGLIFQNCHFMGDPAYLPFKAVNKAYLGRPWKQYSRTIIMGSQIDDIIEPEGWLPWMGDFALNTLFYAELQNKGAGADLSKRVKWLGIKTITPQQALDFTPNIFIDGDDWIKAKGIPYASAMIILHLHSLEFPHQVQHFHALDPLITFILTFEEVPNLLCWAIILLNMDEDTTAYRQALAFAFLVTLSLILHLHSLEFPHLPLILSSSSYSPLRKSQIFFADFKAIWMKTQLHIIGILIAHAFLNSLTCP 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1000943 1003698 - Hsped.03g00850.1 Hepe03g0085 565083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0085 695 ProSitePatterns Pectinesterase signature 1. 282 301 IPR018040 -
Hepe03g0085 695 SUPERFAMILY Pectin lyase-like 251 564 IPR011050 -
Hepe03g0085 695 PANTHER PECTINESTERASE 16 558 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Hepe03g0085 695 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 213 IPR035513 -
Hepe03g0085 695 ProSitePatterns Pectinesterase signature 2. 401 410 IPR033131 -
Hepe03g0085 695 FunFam Pectinesterase 57 213 - -
Hepe03g0085 695 NCBIfam pectinesterase inhibitor domain 55 212 IPR006501 GO:0004857(InterPro)
Hepe03g0085 695 Pfam Pectinesterase 257 553 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Hepe03g0085 695 Pfam Plant invertase/pectin methylesterase inhibitor 60 208 IPR006501 GO:0004857(InterPro)
Hepe03g0085 695 Gene3D - 251 567 IPR012334 -
Hepe03g0085 695 SMART PMEI_2 56 208 IPR006501 GO:0004857(InterPro)
Hepe03g0085 695 FunFam Pectinesterase 251 567 - -
Hepe03g0085 695 CDD PMEI-like_3 63 214 - -
Hepe03g0085 695 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 213 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2556 Hepe-Chr2:72475731 Hepe03g0085 Hepe-Chr3:1000943 1.10e-147 dispersed
Hepe03g0085 Hepe-Chr3:1000943 Hepe03g0087 Hepe-Chr3:1029541 0.0 dispersed
Hepe03g0084 Hepe-Chr3:992779 Hepe03g0085 Hepe-Chr3:1000943 0.0 tandem
Hepe03g0085 Hepe-Chr3:1000943 Hepe03g0086 Hepe-Chr3:1018737 0.0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0085 K01051 - csv:101221958 895.96