Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0087 ATGTCGAACGAATTAGCAAATATCGAAAGTGACAAAAGGAAGAAGAAAATCGCCATCATAAGCGTCTCTACTCTAATCCTCGTGGCAATGGTCGTTGCTGTTGCCATTGGCATCAACAGCGCACCCTACGAAGAACACGGTGATGATCATGGTGACGATCATGGTGATGATCACGATGATGGAGCCGTGGAAATTTCGTCGACGACAAAAGCAGTCCAATCCATTTGTCAACCAACCGATTACAAAGAAACATGCAAGAAGAGCCTAATGTCGGAAGGAGGTAACACGGCAGACCCAAAAGAGCTTGTAAAAATCAACTTCAAAGTCGCCATGGAACATCTAAACAGGGCGATTAGAAATTCCACCACGCTTCAAGAACTAGCAAAAGATCCACGTACCAATCAAGCTCTTCAAAATTGTCGCGAGCTTCTAGAATACGCCATTGACGATATAACCGTTTCGTTCAATCGAATCGGCACCTTCGAAATGGCGAAACTCGACGAGTTTGTCAACGATCTTAAAATTTGGCTGAGTGGGGCCCTCACGTACGAACAAACTTGTTTGGATGGATTCGAAAACACGACTGGTAATGCCGGTGAGAAAATGAAGAAGATTTTAAAGTCGGCTCAACACATGACAAGTAACGGTCTTGCGATGGTAACAGAATTGTCATCCATGTTGGGGACACTTCACATTCCGGGAATAGCTGGACCGGCGCGGAGGTTGTTGGACGAAGAAGATGTGCCATTGTGGGTGAGCGAAGGAAAGAGGCGACTGATGCAGGTGAAGACGACGAGGATTAAGCCGGACGTGGTGGTGGCTCAAGATGGAAGTGGAAAATTCAAGACTATAAATGAAGCTTTGATTGGTGTACCAAGGATGAGTAATAAGACATTTGTGATTTATGTGAAGGCCGGAATTTATAAGGAAATTGTTGTCATCCCACAAGATTTGACTCATCTTACCATGTACGGTGATGGCCCCACTAAAACCGTCGTTACCGGTGATTTAAACTTTGTTGATGGTATCCAAACTTTCAAGACTGCCACCTTCGCGGTAATCGGAACCAATTTCTTTTGTCGAGATATGGGGTTCGAGAACAGCGCTGGACCAACAAAGCACCAAGCTGTAGCACTCCGAGTCCAATCCGATAGATCGATCTTCTACAATTGTCAAATGGACGGATACCAAGACACTCTCTACGCCCAAACCCACCGTCAATTCTATCGCGATTGCAGAATCAGCGGCACCATCGACTTTATCTTCGGCGACTCTGCGGCCATCTTCCAGAACTGCAAATTAGTCGTCCGAAAGCCAATGGAAAACCAACAATGCATCGTCACCGCTCATGGCCGACTCGAACGGCGGGAACCGACGGCCCTAGTCTTCCAAAACTGCCACTTCATGGGCGACCCGGCTTACTTGCCCTTCAAAGCCGTCAACAAAGCGTATTTGGGTCGACCATGGAAGGAATATTCACGAACCATCATAATAGGTTCTCAAATCGACGATTTAATCCAGCCTGAAGGATGGTTGCCGTGGATGGGCAATTTTGGTCTGAACACGTTGTTCTACGCGGAGGTTCAGAATAAAGGAGCAGGCGCCAATCTGAGCAAGAGGGTGAAGTGGCGAGGAATTAAAACTATTACGCCTCAGCACGCCGCGGATTTCACTCCCAGGAGGTTTATCGACGGCGATGCTTGGATTAAACCCAAGGGAATTCCGTACGCTTCTGCAATGATGTAA 1746 46.96 MSNELANIESDKRKKKIAIISVSTLILVAMVVAVAIGINSAPYEEHGDDHGDDHGDDHDDGAVEISSTTKAVQSICQPTDYKETCKKSLMSEGGNTADPKELVKINFKVAMEHLNRAIRNSTTLQELAKDPRTNQALQNCRELLEYAIDDITVSFNRIGTFEMAKLDEFVNDLKIWLSGALTYEQTCLDGFENTTGNAGEKMKKILKSAQHMTSNGLAMVTELSSMLGTLHIPGIAGPARRLLDEEDVPLWVSEGKRRLMQVKTTRIKPDVVVAQDGSGKFKTINEALIGVPRMSNKTFVIYVKAGIYKEIVVIPQDLTHLTMYGDGPTKTVVTGDLNFVDGIQTFKTATFAVIGTNFFCRDMGFENSAGPTKHQAVALRVQSDRSIFYNCQMDGYQDTLYAQTHRQFYRDCRISGTIDFIFGDSAAIFQNCKLVVRKPMENQQCIVTAHGRLERREPTALVFQNCHFMGDPAYLPFKAVNKAYLGRPWKEYSRTIIIGSQIDDLIQPEGWLPWMGNFGLNTLFYAEVQNKGAGANLSKRVKWRGIKTITPQHAADFTPRRFIDGDAWIKPKGIPYASAMM 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1029541 1031456 + Hsped.03g00870.1 Hepe03g0087 565085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0087 581 NCBIfam pectinesterase inhibitor domain 68 223 IPR006501 GO:0004857(InterPro)
Hepe03g0087 581 PANTHER PECTINESTERASE 15 571 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Hepe03g0087 581 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 70 224 IPR035513 -
Hepe03g0087 581 FunFam Pectinesterase 264 580 - -
Hepe03g0087 581 Pfam Pectinesterase 270 566 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Hepe03g0087 581 ProSitePatterns Pectinesterase signature 2. 414 423 IPR033131 -
Hepe03g0087 581 SMART PMEI_2 67 219 IPR006501 GO:0004857(InterPro)
Hepe03g0087 581 Gene3D - 264 580 IPR012334 -
Hepe03g0087 581 ProSitePatterns Pectinesterase signature 1. 295 314 IPR018040 -
Hepe03g0087 581 CDD PMEI-like_3 74 225 - -
Hepe03g0087 581 SUPERFAMILY Pectin lyase-like 265 577 IPR011050 -
Hepe03g0087 581 FunFam Pectinesterase 68 224 - -
Hepe03g0087 581 Pfam Plant invertase/pectin methylesterase inhibitor 71 219 IPR006501 GO:0004857(InterPro)
Hepe03g0087 581 Gene3D Invertase/pectin methylesterase inhibitor family protein 66 224 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0083 Hepe-Chr3:987414 Hepe03g0087 Hepe-Chr3:1029541 0.0 dispersed
Hepe03g0085 Hepe-Chr3:1000943 Hepe03g0087 Hepe-Chr3:1029541 0.0 dispersed
Hepe03g0087 Hepe-Chr3:1029541 Hepe05g1418 Hepe-Chr5:63126448 1.15e-245 dispersed
Hepe03g0086 Hepe-Chr3:1018737 Hepe03g0087 Hepe-Chr3:1029541 0.0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0087 K01051 - csv:101221958 913.294