Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe03g0088 | ATGGCCTCCACCGACGACGACGACGGCGGCTTCCTCTCTCCGCCGTCCTACAAACGCTACGCTCTCAGCGGCAAAATCATGCTCGGCGCAATTATTGTACTGTTGTTCGTCGTTATCCTCATGATTTGTCTTCATCTCTACGTTCGATTGTGTCTTCTCTCCTCCACCCACCGGCAATCCCGCCGCCGCCGTCGCCGTCGTCCGCACTTCGAATTCACAGCGGAGTCTCGATTTGGCGCTGCAGCCGCTCCGCCGTCGCGTGGTTTGCCGCAGTCGATTCTCAAATCCTTACCCGTTTTCGTTCACTCGGCGAAACCCGATCCGGATCCGATTTATTGCGCGGTTTGTTTGTCCGAGTTCGAGGAGAACGAAATCGGCCGGGTTATCCCGAAATGTAATCATAGCTTTCACGTGGGGTGTATTGATATGTGGTTTTACTCGCACGTGACCTGCCCGCTTTGTAGATCCGAGGTGAAACCCGGTTCATCTTCTGATGACCCGCTCGAGATAGCTGTTGATGTTCTCGAACCGGGTTCGAGATCTGGCGAGGGAGAACCGGATCGTTGGTATCCGGTGGAGGTGGACGACATGTCGAATTTTGTGAAGTCGTTGTCATTCAAGGAGGAAACGGAGGCGGTTCGTTCAGATAGATAG | 654 | 54.28 | MASTDDDDGGFLSPPSYKRYALSGKIMLGAIIVLLFVVILMICLHLYVRLCLLSSTHRQSRRRRRRRPHFEFTAESRFGAAAAPPSRGLPQSILKSLPVFVHSAKPDPDPIYCAVCLSEFEENEIGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKPGSSSDDPLEIAVDVLEPGSRSGEGEPDRWYPVEVDDMSNFVKSLSFKEETEAVRSDR | 217 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 1046018 | 1046928 | - | Hsped.03g00880.1 | Hepe03g0088 | 565086 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe03g0088 | 217 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 79 | 161 | IPR013083 | - | |
| Hepe03g0088 | 217 | CDD | RING-H2_EL5-like | 113 | 155 | - | - | |
| Hepe03g0088 | 217 | SUPERFAMILY | RING/U-box | 93 | 160 | - | - | |
| Hepe03g0088 | 217 | ProSiteProfiles | Zinc finger RING-type profile. | 113 | 155 | IPR001841 | - | |
| Hepe03g0088 | 217 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 28 | 165 | - | - | |
| Hepe03g0088 | 217 | SMART | ring_2 | 113 | 154 | IPR001841 | - | |
| Hepe03g0088 | 217 | Pfam | Ring finger domain | 113 | 155 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe03g0088 | Hepe-Chr3:1046018 | Hepe03g1381 | Hepe-Chr3:70451501 | 1.04e-28 | dispersed | |
| Hepe02g3218 | Hepe-Chr2:81758373 | Hepe03g0088 | Hepe-Chr3:1046018 | 1.45e-06 | transposed | |
| Hepe03g0088 | Hepe-Chr3:1046018 | Hepe05g1429 | Hepe-Chr5:63564557 | 4.83e-52 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe03g0088 | - | - | - | 0.0 |