Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0088 ATGGCCTCCACCGACGACGACGACGGCGGCTTCCTCTCTCCGCCGTCCTACAAACGCTACGCTCTCAGCGGCAAAATCATGCTCGGCGCAATTATTGTACTGTTGTTCGTCGTTATCCTCATGATTTGTCTTCATCTCTACGTTCGATTGTGTCTTCTCTCCTCCACCCACCGGCAATCCCGCCGCCGCCGTCGCCGTCGTCCGCACTTCGAATTCACAGCGGAGTCTCGATTTGGCGCTGCAGCCGCTCCGCCGTCGCGTGGTTTGCCGCAGTCGATTCTCAAATCCTTACCCGTTTTCGTTCACTCGGCGAAACCCGATCCGGATCCGATTTATTGCGCGGTTTGTTTGTCCGAGTTCGAGGAGAACGAAATCGGCCGGGTTATCCCGAAATGTAATCATAGCTTTCACGTGGGGTGTATTGATATGTGGTTTTACTCGCACGTGACCTGCCCGCTTTGTAGATCCGAGGTGAAACCCGGTTCATCTTCTGATGACCCGCTCGAGATAGCTGTTGATGTTCTCGAACCGGGTTCGAGATCTGGCGAGGGAGAACCGGATCGTTGGTATCCGGTGGAGGTGGACGACATGTCGAATTTTGTGAAGTCGTTGTCATTCAAGGAGGAAACGGAGGCGGTTCGTTCAGATAGATAG 654 54.28 MASTDDDDGGFLSPPSYKRYALSGKIMLGAIIVLLFVVILMICLHLYVRLCLLSSTHRQSRRRRRRRPHFEFTAESRFGAAAAPPSRGLPQSILKSLPVFVHSAKPDPDPIYCAVCLSEFEENEIGRVIPKCNHSFHVGCIDMWFYSHVTCPLCRSEVKPGSSSDDPLEIAVDVLEPGSRSGEGEPDRWYPVEVDDMSNFVKSLSFKEETEAVRSDR 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1046018 1046928 - Hsped.03g00880.1 Hepe03g0088 565086

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0088 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 161 IPR013083 -
Hepe03g0088 217 CDD RING-H2_EL5-like 113 155 - -
Hepe03g0088 217 SUPERFAMILY RING/U-box 93 160 - -
Hepe03g0088 217 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Hepe03g0088 217 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 28 165 - -
Hepe03g0088 217 SMART ring_2 113 154 IPR001841 -
Hepe03g0088 217 Pfam Ring finger domain 113 155 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0088 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0088 Hepe-Chr3:1046018 Hepe03g1381 Hepe-Chr3:70451501 1.04e-28 dispersed
Hepe02g3218 Hepe-Chr2:81758373 Hepe03g0088 Hepe-Chr3:1046018 1.45e-06 transposed
Hepe03g0088 Hepe-Chr3:1046018 Hepe05g1429 Hepe-Chr5:63564557 4.83e-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g324 . . . . Bpe03g00470 . Bma10g00987 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00573 . Bda05g00365 . . . . . Sed09g0253 . . . . . . . . Bhi12g02037 Tan06g2698 Cmetu11g1047 Lac11g0863 Hepe03g0088 . Lcy12g0752 . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe03g0088 . 18 182 Rapid Response to Elicitors AT3G16720 50.8 1.6e-37 153.7
Hepe03g0088 . 18 182 Rapid Response to Elicitors AT3G16720 50.8 1.6e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013742 0 1 0 0 0 1 2 1 1 1 1 1 1 1 1 0 1 0 2 1 1 0 1 1 1 1 1 2 1 0 25