Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0114 ATGTTGAAACGAAATCTCCCTTTCGCCCTCACCAGGCCTTGTCTTTCCCGCGAAAACGAACGGCCAATTTTTCAAACCATTGAAAATCTCAGTCGCCTTCTTCGAAATTGCAACGATTTCATTTCTTCAACCTCGATTCACTCCATAGCTCTAAAGCTCGGATTCTTAAACCAAACTATCACCGTCAACCATCTCATCAATTGCTATGTCAGATTCCGCAGAGTTGCAATTGCACACCAACTGTTCGACGAAATGCCCACCCCAAATGTGGTGTCATGGACCTCACTCATGGCTGGTTATGTCGACGTTGGCCGGCCGAGTATCGCTCTTTCGCTGTTCGGGGCAATGTCGAGAAGATCGGTTGTGCCTAACGATTTCACTTTCGCGACTGCGATCAAGGCCTGTTCGATCCTTTCGAATTTAAAAGATGGTGAAAAGTTACATGCCTATGTCGAGAGTTTTGGCTATGGAGGTAATGTTGTGGTGTGTTCTTCGCTTGTTGATATGTATGGAAAATGCAATGATGTTTTTAGAGCTAGGAGAGTCTTTGATTCCATGTCTTGTAAGAATATTGTTTCTTGGACTTCAATGATTGCTGCTTATGCTCAAAATGCACACGGCGACGACGCGTTAGAAGTATTTAGGGAATTCGGTAGTTTGAGTTGTGAACATCCAAATCCTTACATGTTAGCTAGTGTGATTAGTGCTTGTGCAAGCTTGGGCAGGCTGGGTTTAGGAAAACTCGTGCATGGTGCAGCGATGCGTCTTGGCTGTGATTCGAACGACGTAGTTGCGAGCGTGTTGGTTGATATGTATGCTAAATGTGGGAGTCTTGAGTATTCTGATAAGGTCTTCAAAAGAATTTCAAATCCTTCTGTTATTCCCTTTACTTCAATGATTGTGAGCACAGCAAAGTATGGACTTGGGAGACAATCCCTTCAACTCTTTGAAGAAATGGTGAGAAAAGGATTGAAACCTAATCATGTCACTTTTGTTGGAGTCTTGCATGCTTGTAGCCATTCAGGGCTTCCTAATGAGGGCCTTGATTATTTGACATCCATGTATGAGAAACATGGGATAATGCCTGAGACTAAGCATTATACATGTGTTGTCGACATGCTAGCTCGAGCCGGGCAGCTAGATAAAGCATACCAACTAGCGAAATCCATGGAGGTAGCGCCTGACGACGAGGCACTGTTGTGGGGAGCACTGCTTTCAGCTAGTAGGTTTCATGGCAGGGTTGATATTGCAGTTGAAGCCTGTCAGCGACTGGTCGATTCCAATCGACAAGTCGCCGGTGCATACGTCACTTTGTCGAATGCCTATGCGTCGGCTGGGGATATGGAGAAGGCTCACAAACTCCGAGTTGAGATGAAGCATACCGGAGTTTACAAAGAACCAGGCTGCAGTTGGCTCGAGATAAAAGATTCGAGTTATGTATTCTACGCCGGGGATATAACGTCGTGCCCCCGAGGCGATGAAGTGTTGCGTTTACTAAGAGAGTTGGAGCGGAAAATGAAGGATCGAGGTTATGCGAGAGGAAGCAAAGGGTTGGTGTTTGTTGATATAGAAGAGGAGGCAGAGGAAGAAAAAGTTTGGCTGCACAGTGAGAGATTGGCATTGGGATTTGGTTTGATTAGCATTCCTAAAGGACTAACCATAAGAATAATGAAGAACTTGAGAATGTGCAGTGATTGTCATGAGGCTTTCAAGCTTATAAGTGAGATTGTGGAGAGAGACTTTGTAGTTAGAGATGTCAACAGATTTCATCATTTCAAAAGTGGTTTTTGTACTTGCAATGATTTCTGGTAA 1812 44.43 MLKRNLPFALTRPCLSRENERPIFQTIENLSRLLRNCNDFISSTSIHSIALKLGFLNQTITVNHLINCYVRFRRVAIAHQLFDEMPTPNVVSWTSLMAGYVDVGRPSIALSLFGAMSRRSVVPNDFTFATAIKACSILSNLKDGEKLHAYVESFGYGGNVVVCSSLVDMYGKCNDVFRARRVFDSMSCKNIVSWTSMIAAYAQNAHGDDALEVFREFGSLSCEHPNPYMLASVISACASLGRLGLGKLVHGAAMRLGCDSNDVVASVLVDMYAKCGSLEYSDKVFKRISNPSVIPFTSMIVSTAKYGLGRQSLQLFEEMVRKGLKPNHVTFVGVLHACSHSGLPNEGLDYLTSMYEKHGIMPETKHYTCVVDMLARAGQLDKAYQLAKSMEVAPDDEALLWGALLSASRFHGRVDIAVEACQRLVDSNRQVAGAYVTLSNAYASAGDMEKAHKLRVEMKHTGVYKEPGCSWLEIKDSSYVFYAGDITSCPRGDEVLRLLRELERKMKDRGYARGSKGLVFVDIEEEAEEEKVWLHSERLALGFGLISIPKGLTIRIMKNLRMCSDCHEAFKLISEIVERDFVVRDVNRFHHFKSGFCTCNDFW 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1383444 1385255 + Hsped.03g01140.1 Hepe03g0114 565112

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0114 603 Gene3D Tetratricopeptide repeat domain 13 142 IPR011990 GO:0005515(InterPro)
Hepe03g0114 603 Gene3D Tetratricopeptide repeat domain 143 247 IPR011990 GO:0005515(InterPro)
Hepe03g0114 603 Gene3D Tetratricopeptide repeat domain 289 538 IPR011990 GO:0005515(InterPro)
Hepe03g0114 603 FunFam Pentatricopeptide repeat-containing protein 103 246 - -
Hepe03g0114 603 NCBIfam pentatricopeptide repeat 192 223 IPR002885 -
Hepe03g0114 603 NCBIfam pentatricopeptide repeat 91 124 IPR002885 -
Hepe03g0114 603 NCBIfam pentatricopeptide repeat 161 192 IPR002885 -
Hepe03g0114 603 NCBIfam pentatricopeptide repeat 296 327 IPR002885 -
Hepe03g0114 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 190 224 IPR002885 -
Hepe03g0114 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Hepe03g0114 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 89 123 IPR002885 -
Hepe03g0114 603 Pfam PPR repeat family 88 135 IPR002885 -
Hepe03g0114 603 Pfam PPR repeat family 291 339 IPR002885 -
Hepe03g0114 603 PANTHER OS07G0578800 PROTEIN-RELATED 224 488 IPR045215 GO:0003723(PANTHER)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009451(PANTHER)|GO:0043231(PANTHER)
Hepe03g0114 603 SUPERFAMILY TPR-like 371 453 IPR011990 GO:0005515(InterPro)
Hepe03g0114 603 Pfam PPR repeat 366 391 IPR002885 -
Hepe03g0114 603 Pfam PPR repeat 161 191 IPR002885 -
Hepe03g0114 603 Pfam PPR repeat 192 217 IPR002885 -
Hepe03g0114 603 Pfam PPR repeat 60 85 IPR002885 -
Hepe03g0114 603 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 263 490 - -
Hepe03g0114 603 Pfam E motif 412 473 IPR046848 -
Hepe03g0114 603 Pfam DYW family of nucleic acid deaminases 518 603 IPR032867 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0114 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0114 Hepe-Chr3:1383444 Hepe09g1769 Hepe-Chr9:55388354 7.08e-136 dispersed
Hepe03g0114 Hepe-Chr3:1383444 Hepe10g1269 Hepe-Chr10:48184763 6.89e-137 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g329 . Blo12g00020 . . Bpe04g01129 . . . Cmo08g01191 . . . . . . . . . . . . . . . Cla06g00491 . . . . . . . . . Cone4ag0156 . . Chy11g01486 . . . . . . . . . . . . Cma08g01218 . Car08g01091 . . Cpe17g00013 Bhi12g02081 . . . Hepe03g0114 . Lcy13g0186 . . . . . . . Lsi09g01416 . . Cme11g01993
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011153 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 2 1 1 1 0 1 1 0 1 1 1 1 1 29