Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0115 ATGATTGTTGGAACTAGGGTTTTGGGTTCGCATTTAATGGTGGGCTCTGTGGAGCCAATGATGATGGAGGAAGAAGGCGAAGCTTCTTGCTATTACAAGGAGAATGCCGGTGATGTTGACCTTGATATTAGTCTCTCTTACATTGATGAGAAGATCGAGCGTTTTCTTGGTCATTTCCAAAAGGACTTTGAAGGTGGCGTTTCAGCTGAAAAATTAGGGTCAAGGTATGGTGGTTATGGCTCATTTTTGCCTACATACGAACGCCCTCCTTCCATTTTGCCACACAATATAAATCAACAAAGAGACTGCAATGCGGCACCAACTCCGGATAATGTGCCCTTGGAGGGCTCTTCTCAGAATCCAAAAGCTCCACCACCTAAGAGGCCAGAAGGTATTGTCTGCAATACTATTTCCTCTCACAATACAAGGGAAACTTCTGGCAGTATCTCTGGGAGAGTAGATTCATGTTTGCCGTCTACTAAAGTTACTAATAGTTGCCCTTCGAAAGTTGAAGCTTCAAGCCAATTAGGTGGTCCGATGAACAACAGATCGCTTAAATTTCGAATTAAAGTTGGTTCGGACAGTACTGCATTGAAAAATGCAGCAATATACAGTGGCCTTGGACTTGACGACTCTCCATTGTCATCATCAGAAAACAGCTCTGACGTAAGTGAAGGGCTGCTACCCATATCTCGAAGCCCACCAGATGAGTCCCTGACTAAGATAATTGAGGCAATGACTTCTTTCCCAGTGCCTCATGGAGCATTGATATCTCCTCTTCATGATAGCCTACTTGGGTTGTCAAGAAAGGAAAAACCGGTTCGAGAAACCAAACCCGTGATTTCCCTTGAGTATAAAAAAGATGGTTTGACCAAGCTAGCCAATGAGACAACTTTGAAGCAAATGGACAGTACATTGGTTAAGAAGAAGAAAAAGGAGGTGGGGCATAGAGAAAGGCAGGTTGATCATAAGAACGAAGTTCGTGCTTCTCTTGGGAAGGAGAAGACTACTCTCATAAATGGAAAATCAGAAAATGAGGCTTTTGAAAGCAAGGATGTCCTGTCTAATGAGTTGCAATGCAGACCTGTTTCCGAGGGCACTAAGTCCAATGCTTACTTAGACCCACAAAAGAAGAAGATTTCTCATAAAGCTCTACACGAAACAGATAAAGACAAAGCATCAATTAAGAAAGAAAAGCCTGAAATTGTTGGCGAGAAGAAATTGAAAGTGCTACAGACTGCTGGTGGGAAAATAGGTGGTTCATTTGAGGAAGGCTTCAAGATTAGAAGTGAAGCATCAAAAGGTAGAAAGGACATCGATTCGGACACTCCTGAATCTGAAAATAGAAGACACAGGTTAAAACTACACATCAATGAGAAAGTAGGAGCAAACAATAGGGATTCTTTTAACAGCTCAGGGTTCGATGAAAACCGTAAAACTAAGGATGTAATTGAGAGGGACTCTGGTGACTTAAGAAAGTTCAAAGGCCTGGATGACAGTGGAATCAAAACGTCCAAATCCTCAAAGGTGGTTGAACCAGCAGTGGTGGCTCCTGTGGTCATGGAAGAATGGGTAGGCTGTGACAATTGCCAGAAGTGGCGCCTTCTGCCCTTCGGGTCAAATCAACTTCCTGAAAAATGGTCGTGTAGCATGCTAGATTGGCTGCCTGGGATGAACCAGTGTGAAATTAGTGAGGAGGAGACAACGGCAAAGGTTTATGCTATGTACCAGTTACCATTGCCTGGGAGTGGAGATGTTTTGCAGAACCATGCCAATGGACTAACATCAGGTGATACTTCAAATCAAGCAAAAAAGAAAGAAACTTTGAAGGAAGTACAAAATCCAGTTAGCAGAAATGGCCAGACTCATGTCAAGAGTTCTCTGAAAAACCAGCAGCAGGAGTCAACGAAAAACAGAAGTCTTAGTGGCTTGAGTAATCCTCCAAATCAATTGAGAAATTCAATTGATCAATCTTCTAGTGACCTGCACAACTTGGTAGAGGGAAAGAACAGAGGTAAACTGAAAGAAAAATCCATTGATAGAGTTAATTGCGACCAATTGAAAAGGAAGATCAAGAGACCTGAAGTCACGCGCTCTGTTGATAATCATCAAGACTTCAATATGGACCTTGGAAAGTTGGGTTCTAGTTCAAATTCCGGCTTGACAAATATGGAAGGTGGGGAAGGTATGCTGAAGCACACTGACATTGGTTTAAAGAAGCACACCAAATTCAACACGGAGAATAAAGTGCAAATTTCATTGAAGAAACGGGGAGAAACAGCCGAGATCTCCTCTGTTGTTAGGTCCACTGTTGATCAAGTAAGTGGTAAAAGTGCTTGCACAAAGAAGAGGAAACTGAAGGATTGGCAGGATGATCAAAATTCTCATAACAGTGCACTCCATGAACCCGTGCTTTTGAAGGAAGAAAATTGTGAAAGATCGAAGAAGAAAAAGAAGCCTAATGTGTCAAATGATTTTACTGTTGGTATGGAAGAAATCAGCAAGGATAAGGAACCAAAAATGCAAAATAAGAAGATTTTTCCTAAACAAACATCAGTTGGTAAGGAGTTACTGAAGAGAAATTTAGGTGCTCGACAAGTTTCAGCGGCAGCTAACTCTAGCTCTTCAAATGTTTCTCAATCTCATTTAACTAAAGCCAAATTTGGAGTCAAAGTATCTCCTGCTGAATCAGTTTCATCATCTCCCACGAGGACGTCTGGCCTTGATCAATTTGGAGGAGAAAAAGAAGAGATTACCTCTAATATTCATTCTGGCTCTCATAAAGTTTCGCCGGTGTGTGGCTTTGGGTTTAAGGATACTGCTCTCAACACCAACAGCAAGAAAGTCAAAGCTTCATCTGCAGTTCAACACCATTTTGTTACTGCTGATGCTAATACTGTTAAGCAACCTCGGTTGTGCAATAATCGTACAGATGACAGCACGGAACCCAGTCACAAGAAACGCAAGAAAGAGAAGATTCATGTTGGTGCTGAAGAGTTCGCAACCCCTCAAAATCTCAAGGGTCATGATGCTGAAGACCAGAGATCAGATGCTTTACTTCAATCAAATAGAGCAGTTAGACTTCAGACAAAGCAAAGTCGGGAAGTTGAAGCAGGAAATAAAGGTGCTAGAACAGTAGAAATGAGGGACGGGAAATCAAAATGCTTCTCTTCTGGAGGTGGTGAATGCAGAGAAGAACCATCACGTCTTGGTGGTGATCCTTTACGAGTTTCTATGAGGGTGGGCGATTCTCGTCAGCTTATTGCTGATGCCCCTAAAAGTGTTGATGCGGTAGAGTCAAAGACATTAAAGAATTTGGGGAATGCTGGCAATGCTTCAAATCTCGACAGAACAAAATCCTCCAATCAGACCGCTTGTAATACATTAAAGGAAGCCAAAAAACTTAGAGATAATGCAGATAACTTAAAGAGTGCTGGATTCAGTTTTGAAAGTAACGAGCTTTACTTTCAATCTGCTCTGAAGTATCTTCATGGAGCATTCCTTCTAGAGACTCTTAATAATGCGACTGGCAAGCATGGTGATACGACTCCCATGCAATTCTATGGCATTACGGCTGAACTTTGCGAGATCTGTGTCGTTGAATATGAACGTCGCAAAGAAATGGCTGCAGCAGCTTTGGCTTTTAAATGTATCGAAGTAGCATACTTGCGGATAGTTTACCATAAACATTCAAGTATCAATGGAGATCGCCTCGAGATGCACTCGTTGTTCCGTACAATTGTGCAAGGTGAATCTCCATCGTCTTCTGCATCAGATGTCGATAACTTGAGCAATCAAGGAGCTACGGATAAGGCTACTTTCGACAAGGTCGGTGGTTCCCACATGGCCAGAAATCACATCTGGAATTCTGGAAACTGCACGAGTTTTGCTCGGGTCCTCGATTTTGCACGCGATATGAATTCAGCCATGGAGGCCTCGAGAAAATCTCGAAATGCATTTGTGGCAGCTAGTTCATGTGCCAGTGAAGGAAAACACATGGACTATGTTGCATCGGTTAAAAAGGTGATTGATTTCAGCTTCCAAGATGTAGGGGAACTCGTACAGTTGGTTCGGGTTGCTACGCAGACGATAACTCACTCGGGTTTTCAAAGTGGTAGAGATTAG 4125 42.42 MIVGTRVLGSHLMVGSVEPMMMEEEGEASCYYKENAGDVDLDISLSYIDEKIERFLGHFQKDFEGGVSAEKLGSRYGGYGSFLPTYERPPSILPHNINQQRDCNAAPTPDNVPLEGSSQNPKAPPPKRPEGIVCNTISSHNTRETSGSISGRVDSCLPSTKVTNSCPSKVEASSQLGGPMNNRSLKFRIKVGSDSTALKNAAIYSGLGLDDSPLSSSENSSDVSEGLLPISRSPPDESLTKIIEAMTSFPVPHGALISPLHDSLLGLSRKEKPVRETKPVISLEYKKDGLTKLANETTLKQMDSTLVKKKKKEVGHRERQVDHKNEVRASLGKEKTTLINGKSENEAFESKDVLSNELQCRPVSEGTKSNAYLDPQKKKISHKALHETDKDKASIKKEKPEIVGEKKLKVLQTAGGKIGGSFEEGFKIRSEASKGRKDIDSDTPESENRRHRLKLHINEKVGANNRDSFNSSGFDENRKTKDVIERDSGDLRKFKGLDDSGIKTSKSSKVVEPAVVAPVVMEEWVGCDNCQKWRLLPFGSNQLPEKWSCSMLDWLPGMNQCEISEEETTAKVYAMYQLPLPGSGDVLQNHANGLTSGDTSNQAKKKETLKEVQNPVSRNGQTHVKSSLKNQQQESTKNRSLSGLSNPPNQLRNSIDQSSSDLHNLVEGKNRGKLKEKSIDRVNCDQLKRKIKRPEVTRSVDNHQDFNMDLGKLGSSSNSGLTNMEGGEGMLKHTDIGLKKHTKFNTENKVQISLKKRGETAEISSVVRSTVDQVSGKSACTKKRKLKDWQDDQNSHNSALHEPVLLKEENCERSKKKKKPNVSNDFTVGMEEISKDKEPKMQNKKIFPKQTSVGKELLKRNLGARQVSAAANSSSSNVSQSHLTKAKFGVKVSPAESVSSSPTRTSGLDQFGGEKEEITSNIHSGSHKVSPVCGFGFKDTALNTNSKKVKASSAVQHHFVTADANTVKQPRLCNNRTDDSTEPSHKKRKKEKIHVGAEEFATPQNLKGHDAEDQRSDALLQSNRAVRLQTKQSREVEAGNKGARTVEMRDGKSKCFSSGGGECREEPSRLGGDPLRVSMRVGDSRQLIADAPKSVDAVESKTLKNLGNAGNASNLDRTKSSNQTACNTLKEAKKLRDNADNLKSAGFSFESNELYFQSALKYLHGAFLLETLNNATGKHGDTTPMQFYGITAELCEICVVEYERRKEMAAAALAFKCIEVAYLRIVYHKHSSINGDRLEMHSLFRTIVQGESPSSSASDVDNLSNQGATDKATFDKVGGSHMARNHIWNSGNCTSFARVLDFARDMNSAMEASRKSRNAFVAASSCASEGKHMDYVASVKKVIDFSFQDVGELVQLVRVATQTITHSGFQSGRD 1374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1386548 1393567 - Hsped.03g01150.1 Hepe03g0115 565113

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0115 1374 PANTHER CW-TYPE ZINC FINGER 24 1366 - -
Hepe03g0115 1374 MobiDBLite consensus disorder prediction 892 911 - -
Hepe03g0115 1374 MobiDBLite consensus disorder prediction 971 999 - -
Hepe03g0115 1374 Pfam CW-type Zinc Finger 523 567 IPR011124 GO:0008270(InterPro)
Hepe03g0115 1374 MobiDBLite consensus disorder prediction 613 665 - -
Hepe03g0115 1374 MobiDBLite consensus disorder prediction 210 227 - -
Hepe03g0115 1374 MobiDBLite consensus disorder prediction 209 232 - -
Hepe03g0115 1374 MobiDBLite consensus disorder prediction 587 674 - -
Hepe03g0115 1374 MobiDBLite consensus disorder prediction 894 908 - -
Hepe03g0115 1374 MobiDBLite consensus disorder prediction 588 602 - -
Hepe03g0115 1374 MobiDBLite consensus disorder prediction 90 134 - -
Hepe03g0115 1374 MobiDBLite consensus disorder prediction 429 449 - -
Hepe03g0115 1374 MobiDBLite consensus disorder prediction 978 997 - -
Hepe03g0115 1374 MobiDBLite consensus disorder prediction 1051 1073 - -
Hepe03g0115 1374 Gene3D - 520 573 - -
Hepe03g0115 1374 MobiDBLite consensus disorder prediction 92 118 - -
Hepe03g0115 1374 ProSiteProfiles Zinc finger CW-type profile. 518 569 IPR011124 GO:0008270(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0115 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0115 Hepe-Chr3:1386548 Hepe03g1923 Hepe-Chr3:76323587 9.82e-102 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g330 . . . . . . . Bma05g01045 Cmo08g01190 Cmo17g00302 . . . . . . . . . . . . . . Cla06g00492 Cam06g0529 Cec06g0529 Cco06g0533 Clacu06g0513 Cmu06g0515 Cre06g1286 . . Cone7ag0159 Cone4ag0157 . . Chy11g01485 . . . . . . . . . Sed09g1215 . . Cma08g01217 Cma17g00314 Car08g01090 Car17g00288 Cpe12g00266 Cpe17g00012 Bhi12g02083 Tan06g0860 Cmetu01g0223 Lac12g2393 Hepe03g0115 . Lcy13g0188 . . . . . . . Lsi09g01415 . . Cme11g01992
Vvi5g465 . . . . . Bpe14g01176 . . Cmo08g01131 . . . . . . . . . . . . . . . Cla06g00563 Cam06g0603 Cec06g0603 Cco06g0608 Clacu06g0589 Cmu06g0584 Cre06g1350 . . Cone7ag0236 Cone4ag0226 . . . . Blo02g00551 . . Bda13g00134 . . . . . . . Cma08g01159 . Car08g01036 . . Cpe17g00137 Bhi12g01823 . . . Hepe03g0115 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003760 1 2 1 2 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 2 3 1 1 2 3 2 46