Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0122 ATGGCGAAACCCTCGAAGCGACCGGCGTCTTCCGACGAAGCCATGTCCAATGATGGCTCGAGCTCGTCGGAGGAAGAGGAGCAAATTAACGAGCAGATCAATGAGGAGGAAGACGACGAGGAGCTCGAAGCGGTCGCTCGCTCGGCAGGCTCCGACGAGGATGAAGCTCCAGACGATTCTGATAACGATACATCACCTGTCGAAAATGGCGAGGAAGAGGAAGATGAAGAGGATGGAAGTAACGACGGCAGTGATGATAAAGTCGATATTAGCAGGCGTGAAAAGGCCAGGCTAAGAGAAATGCAACACATGAAGAAGCAGAAGATTCAGGATATGTTAGAGGAGCAGAATGCTGCAATTGATGCTGATATGAATAGTAAGGGGAAGGGACGCTTGAAATATCTTCTGCAACAAACTGAGATATTTGCTCATTTTGCAAAAGGCGATCATTCTTCTTCCCAGAAGAAAACGAAGGGAAGGGGTCGCCATGCATCGAAACTAACTGAAGAAGAAGAAGATGAAGAATACCTTAAGGAGGAAGAAGATGGTCTATCTGGGACTGGGAACACTCGTCTACTTACACAACCATCTTGCATCCAAGGGAAAATGAGGGATTATCAACTAGCTGGATTAAATTGGCTCATTCGACTATATGAGAATGGCATAAATGGAATCCTTGCAGATGAGATGGGGCTTGGCAAGACATTACAAACCATCTCATTGATGGGGTATCTCCATGAGTACAGAGGCATAACAGGCCCCCATATGGTAGTTGCACCTAAATCTACTCTGGGAAACTGGATGAATGAAATTCGTCGTTTTTGCCCTCTCTTGCGTGCTGTAAAGTTTCTTGGAAATCCTGACGAAAGGAGGGATATACGGGAAAATTTACTGGTTGCTGGGAAGTTTGATGTTTGTGTTACCAGTTTCGAAATGGCCATCAAGGAGAAGACTTGCTTGCGTCGTTTTAGTTGGCGCTACATTATTATTGATGAAGCTCATCGAATTAAGAATGAGAATTCCCTCCTTTCAAAGACAATGAGGCTTTATAATACCAACTATCGTCTTTTAATCACTGGCACACCACTTCAGAACAATCTTCATGAACTATGGTCTCTCCTCAATTTCCTTTTGCCTGAAATTTTTAGTTCAGCTGAGACTTTTGATGAATGGTTTCAAATTTCTGGGGAAAATGATCAGCAGGAGGTTGTTCAGCAACTTCACAAGGTCCTTCGGCCTTTTCTTCTTCGGAGGTTGAAATCGGATGTCGAGAAAGGTTTGCCTCCAAAAAAAGAAACAATACTCAAAGTAGGCATGTCACAGATGCAAAAACAATACTATCGTGCTTTGCTGCAGAAGGATCTTGAAGTTGTTAATGCTGGTGGTGAGCGTAAACGGCTTCTTAATATTGCAATGCAGCTTCGGAAATGCTGTAATCACCCATATTTGTTTCAAGGGGCTGAACCTGGGCCTCCTTACACCACAGGAGACCATCTTATTACAAGTGCTGGTAAAATGGTTCTTTTGGACAAGTTGCTTCCAAAGCTGAAAGAGCGTGATTCTAGAGTCCTAATATTTTCGCAGATGACAAGGCTGTTGGACATTCTTGAAGATTATTTAATGTTCCGTGGATACTATTACTGTCGGATTGATGGTAACACTGGTGGTGAAGATCGTGATGCATCCATCGATGCCTTCAATAAGCCAGGAAGTGAAAAATTTGTTTTCTTACTATCAACCAGAGCTGGAGGTCTTGGTATTAATCTTGCTACTGCAGATGTTGTCATTCTTTATGACAGTGACTGGAACCCTCAAGTTGATCTGCAAGCACAAGATCGTGCTCACAGGATTGGTCAGAAAAAGGAAGTTCAAGTGTTCCGGTTTTGCACTGAGTATACTATTGAGGAAAAAGTGATTGAAAGAGCTTACAAGAAACTTGCTCTCGATGCTTTGGTGATTCAACAAGGACGTTTAGCAGAGCAGAAAACTGTCAACAAGGATGAGCTACTTCAAATGGTGAGGTTTGGTGCTGAGATGGTTTTCAGTTCCAAAGATAGTACCATCACAGATGAGGACATTGACAGAATAATTGCAAAAGGAGTAGCAGCAACAGCAGAGCTTGATGCAAAGATGAAGAAATTTACAGAAGATGCCATTAAATTTAAAATGGATGAAACTGCTGAATTGTATGATTTTGATGATGAAAAGGATGAGAATAAATTTGACTTCAAGAAAATTGTTAGTGACAATTGGATTGAACCACCTAAAAGGGAGCGGAAACGCAATTACTCGGAATCAGAATACTTTAAGCAAACAATGCGGCAGGGTGGTCCAACAAAACCAAAAGAGCCTAGGATTCCTCGCATGCCTCAGTTGCACGATTTCCAGTTTTTTAACACACAAAGGTTGAGTGAACTCTATGAAAAAGAAGTGCGGTATCTCATGCAAACACATCAAAAGAATCAGTTGAAAGACACAATAGATGTTGAGGAGCCTGAAGAAGTGGGTGATCCCTTGACTGCCGAAGAGCTGGAAGAGAAGGAACGACTCTTAGAGGATGGATTTTCTTCATGGAGTCGCAGAGATTTCAATACATTTATTAGGGCTTGTGAGAAGTATGGGCGAACTGATATAAAAAGTATTGCTTCAGAGATGGAAGGAAAAACAGAAGAAGAAGTTGAGAGATATGCAAAGGTCTTTAAAGAGAGATACAAGGAGTTAAATGATTATGATAGAATCATCAAGAACATAGAAAGAGGGGAAGCAAGGATTTCTCGTAAAGATGAAATAATGAAAGCCATTGGCAAGAAACTGGATCGCTACAAAAATCCATGGCTGGAGCTCAAGATCCAGTATGGCCAGAATAAGGGGAAGTTGTATAACGAAGAATGCGATCGTTTCATGATATGCATGGTTCACAAGCTTGGTTATGGAAACTGGGACGAACTGAAGGCTGCATTTCGCACATCACCCTTGTTTCGTTTTGATTGGTTTATCAAGTCACGAACGACACAAGAACTCGCGAGGAGGTGTGATACATTAATTCGATTAGTGGAGAAGGAAAACCAGGAACATGATGAAAGGGAAAGACAGGCCCGCAAAGAAAAGAAGCTTGCGAAGAGTATGACGACGCCATCAAAACGTTCACTTGCTAGGCAGACCGAGAGCCCAACGAACATAAAGAAGCGAAAGCAACTAACAATGGATGATTATGTGAACTCCGGAAAGCGGAGGAAATAA 3240 42.25 MAKPSKRPASSDEAMSNDGSSSSEEEEQINEQINEEEDDEELEAVARSAGSDEDEAPDDSDNDTSPVENGEEEEDEEDGSNDGSDDKVDISRREKARLREMQHMKKQKIQDMLEEQNAAIDADMNSKGKGRLKYLLQQTEIFAHFAKGDHSSSQKKTKGRGRHASKLTEEEEDEEYLKEEEDGLSGTGNTRLLTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLMGYLHEYRGITGPHMVVAPKSTLGNWMNEIRRFCPLLRAVKFLGNPDERRDIRENLLVAGKFDVCVTSFEMAIKEKTCLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITSAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYYYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGVAATAELDAKMKKFTEDAIKFKMDETAELYDFDDEKDENKFDFKKIVSDNWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDTIDVEEPEEVGDPLTAEELEEKERLLEDGFSSWSRRDFNTFIRACEKYGRTDIKSIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFIKSRTTQELARRCDTLIRLVEKENQEHDERERQARKEKKLAKSMTTPSKRSLARQTESPTNIKKRKQLTMDDYVNSGKRRK 1079
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1469160 1477243 - Hsped.03g01220.1 Hepe03g0122 565120

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0122 1079 Pfam Helicase conserved C-terminal domain 505 618 IPR001650 -
Hepe03g0122 1079 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 508 659 IPR001650 -
Hepe03g0122 1079 FunFam Chromatin-remodeling complex ATPase 204 419 - -
Hepe03g0122 1079 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 171 1049 - GO:0000785(PANTHER)|GO:0003677(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0006357(PANTHER)|GO:0016887(PANTHER)|GO:0034728(PANTHER)|GO:0042393(PANTHER)|GO:0140658(PANTHER)
Hepe03g0122 1079 Coils Coil 1015 1038 - -
Hepe03g0122 1079 Coils Coil 23 43 - -
Hepe03g0122 1079 SMART helicmild6 534 618 IPR001650 -
Hepe03g0122 1079 MobiDBLite consensus disorder prediction 1022 1042 - -
Hepe03g0122 1079 CDD DEXHc_SMARCA1_SMARCA5 200 420 IPR044754 GO:0005524(InterPro)
Hepe03g0122 1079 Gene3D iswi atpase 909 941 - -
Hepe03g0122 1079 SUPERFAMILY Homeodomain-like 857 907 IPR009057 -
Hepe03g0122 1079 ProSiteProfiles SANT domain profile. 853 905 IPR017884 -
Hepe03g0122 1079 MobiDBLite consensus disorder prediction 54 83 - -
Hepe03g0122 1079 SUPERFAMILY Homeodomain-like 909 1031 IPR009057 -
Hepe03g0122 1079 Gene3D - 204 419 IPR038718 -
Hepe03g0122 1079 FunFam ISWI chromatin-remodeling complex ATPase CHR11 755 853 - -
Hepe03g0122 1079 Gene3D - 424 716 IPR027417 -
Hepe03g0122 1079 Gene3D - 854 908 - -
Hepe03g0122 1079 MobiDBLite consensus disorder prediction 146 189 - -
Hepe03g0122 1079 FunFam ISWI chromatin-remodeling complex ATPase CHR11 942 1045 - -
Hepe03g0122 1079 Pfam SNF2-related domain 206 483 IPR000330 GO:0005524(InterPro)|GO:0140658(InterPro)
Hepe03g0122 1079 FunFam ISWI chromatin-remodeling complex ATPase CHR11 424 716 - -
Hepe03g0122 1079 MobiDBLite consensus disorder prediction 1 104 - -
Hepe03g0122 1079 SMART sant 956 1017 IPR001005 -
Hepe03g0122 1079 SMART sant 854 903 IPR001005 -
Hepe03g0122 1079 Gene3D ISWI, HAND domain 755 853 IPR036306 GO:0003677(InterPro)|GO:0006338(InterPro)|GO:0031491(InterPro)
Hepe03g0122 1079 MobiDBLite consensus disorder prediction 1057 1079 - -
Hepe03g0122 1079 SMART ultradead3 199 391 IPR014001 -
Hepe03g0122 1079 MobiDBLite consensus disorder prediction 1022 1079 - -
Hepe03g0122 1079 Pfam SLIDE 911 1021 IPR015195 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006338(InterPro)
Hepe03g0122 1079 MobiDBLite consensus disorder prediction 84 104 - -
Hepe03g0122 1079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 698 IPR027417 -
Hepe03g0122 1079 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 215 380 IPR014001 -
Hepe03g0122 1079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 418 IPR027417 -
Hepe03g0122 1079 CDD SF2_C_SNF 504 629 IPR049730 -
Hepe03g0122 1079 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 854 908 - -
Hepe03g0122 1079 CDD SANT 857 901 IPR001005 -
Hepe03g0122 1079 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 766 856 IPR036306 GO:0003677(InterPro)|GO:0006338(InterPro)|GO:0031491(InterPro)
Hepe03g0122 1079 Pfam HAND 767 848 IPR015194 GO:0003677(InterPro)|GO:0006338(InterPro)|GO:0031491(InterPro)
Hepe03g0122 1079 MobiDBLite consensus disorder prediction 24 43 - -
Hepe03g0122 1079 Gene3D - 942 1045 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0122 K11654 - - csv:101221495 2009.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0010 Hepe-Chr1:1311236 Hepe03g0122 Hepe-Chr3:1469160 3.58e-45 dispersed
Hepe03g0122 Hepe-Chr3:1469160 Hepe03g0178 Hepe-Chr3:2229602 4.40e-150 dispersed
Hepe03g0122 Hepe-Chr3:1469160 Hepe03g0702 Hepe-Chr3:17344512 7.08e-101 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g460 . . . . . Bpe14g01173 . . Cmo08g01132 Cmo17g00241 . . . . . . . . . . . . . . Cla06g00562 Cam06g0602 Cec06g0602 Cco06g0607 Clacu06g0588 Cmu06g0583 Cre06g1349 . . . . . . . . Blo02g00553 . . Bda13g00140 . . Bma02g00859 . Sed09g0640 . . Cma08g01160 Cma17g00255 Car08g01037 Car17g00229 Cpe12g00211 Cpe17g00136 Bhi12g01822 Tan06g2636 Cmetu11g0294 Lac12g2383 Hepe03g0122 . Lcy13g0197 . . . . . . . Lsi09g01338 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009268 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55197 PF00176 SNF2_N 5.10E-71 CL0023 Hepe TR