Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0129 ATGTCGTTGAAGAGTATCTTTCAGGATATGAGGTCCCGCTCCCGCCGTGTCGTGCAGGACGGCTCTGCGCCGGAGCCGCCGAGGGACGGCCTCGACCAGAGTTGTTGGGCCAATATGCCTCAGGAGCTTCTCAGGGAGGTTCTGATGAGAATCGAGGCGTCGGAAACCTCCTGGCCGCCGAGGAAGAGCGTCGTCGCCTGCGCCGGAGTTTGCCGGAGTTGGCGAGCCATTACCAAAGAGATCGTTAAAACGCCGGAGGTTTCCGGCAGGTTGACGTTCCCGATCTCCATCAAGCAGCCTGCTCCAAGGGATCCTCTTCTACAGTGTTTCATAAAGCGAAACAGATCCAGTCAAACTTATTATCTTTTCCTCAGTTTGACAAATGCACTAAATGATGATGGTAAATTTCTACTTGCTGCACGTAAATGCAAGCGCCCGACCTACACAGATTATATTATCTCTTTACATGCCGAGGATTTGTCAAAGGGGAGCAGCACGTATGTTGGGAAATTGAGATCAAATTTCCTAGGAACGAAGTTCACAATCTTCGACGGGCAACCACCACATTCCGGAGCGAAGATCACAAAAAGTCGCTCCACAAGGCTAGTGAATCTGAAACAAGTTTCACCCAAGGCCCCAGCAGGAAACTATCCAGTTGCCCACATTTCATATGAACTAAATGTATTGGGATCAAGGGGTCCAAGGAGAATGCAGTGTATCATGGACGCTATTCCTGCCGCTGCAGTTGAACCTGGAGGAGTGGCTCCCACGCAGACCGAGCTTTCAGTGAGCAATGTGGAATTGTTTCCATCGTTTCCTTTCCTAAGGTCAAAATCAAATGCGGATAGCTTGCTTTCGGAACCTTTGGGCAGTCAGAAAGATGGAATGTTGGTGCTGAGAAACAAGACGCCCAGGTGGCACGAGCAGCTTCAGTGCTGGTGTTTGAACTTTCATGGAAGAGTTACAATTGCTTCTGTGAAAAATTTCCAACTAGTTGCTTCTTTGGAAAATGAACCACCTACACAAGAACACGAGAAGATCATCCTTCAGTTCGGAAAAGTAGGGAAAGATTTATTCACAATGGATTATCGTTACCCAATCTCCGCTTTCCAGGCTTTTGCAATCTGCCTCAGCAGCTTTGACACAAAGATTGCTTGTGAATGA 1164 48.45 MSLKSIFQDMRSRSRRVVQDGSAPEPPRDGLDQSCWANMPQELLREVLMRIEASETSWPPRKSVVACAGVCRSWRAITKEIVKTPEVSGRLTFPISIKQPAPRDPLLQCFIKRNRSSQTYYLFLSLTNALNDDGKFLLAARKCKRPTYTDYIISLHAEDLSKGSSTYVGKLRSNFLGTKFTIFDGQPPHSGAKITKSRSTRLVNLKQVSPKAPAGNYPVAHISYELNVLGSRGPRRMQCIMDAIPAAAVEPGGVAPTQTELSVSNVELFPSFPFLRSKSNADSLLSEPLGSQKDGMLVLRNKTPRWHEQLQCWCLNFHGRVTIASVKNFQLVASLENEPPTQEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1546333 1550198 - Hsped.03g01290.1 Hepe03g0129 565127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0129 387 Pfam F-box domain 36 79 IPR001810 GO:0005515(InterPro)
Hepe03g0129 387 Gene3D - 29 84 - -
Hepe03g0129 387 FunFam Tubby-like F-box protein 93 387 - -
Hepe03g0129 387 CDD F-box_AtTLP-like 36 80 - -
Hepe03g0129 387 PANTHER TUBBY-RELATED 33 386 - -
Hepe03g0129 387 Pfam Tub family 98 382 IPR000007 -
Hepe03g0129 387 SUPERFAMILY F-box domain 28 79 IPR036047 GO:0005515(InterPro)
Hepe03g0129 387 PRINTS Tubby superfamily signature 151 167 IPR000007 -
Hepe03g0129 387 PRINTS Tubby superfamily signature 167 191 IPR000007 -
Hepe03g0129 387 PRINTS Tubby superfamily signature 299 316 IPR000007 -
Hepe03g0129 387 PRINTS Tubby superfamily signature 317 333 IPR000007 -
Hepe03g0129 387 PRINTS Tubby superfamily signature 365 387 IPR000007 -
Hepe03g0129 387 PRINTS Tubby superfamily signature 344 363 IPR000007 -
Hepe03g0129 387 PRINTS Tubby superfamily signature 216 243 IPR000007 -
Hepe03g0129 387 ProSitePatterns Tub family signature 1. 317 330 IPR018066 -
Hepe03g0129 387 MobiDBLite consensus disorder prediction 1 32 - -
Hepe03g0129 387 Gene3D Tubby Protein; Chain A 94 387 IPR025659 -
Hepe03g0129 387 ProSitePatterns Tub family signature 2. 372 387 IPR018066 -
Hepe03g0129 387 SUPERFAMILY Tubby C-terminal domain-like 85 387 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0129 Hepe-Chr3:1546333 Hepe10g1960 Hepe-Chr10:56548708 2.11e-149 dispersed
Hepe02g2796 Hepe-Chr2:76933994 Hepe03g0129 Hepe-Chr3:1546333 4.73e-147 transposed
Hepe07g0976 Hepe-Chr7:13300191 Hepe03g0129 Hepe-Chr3:1546333 1.10e-128 transposed
Hepe03g0129 Hepe-Chr3:1546333 Hepe05g1485 Hepe-Chr5:64291328 1.98e-227 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55198 PF01167 Tub 1.90E-110 CL0395 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0129 K19600 - csv:101203437 717.227