Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0182 ATGTCTCGCGTTCGGAATTTCAGTTCACAAGGAGGGATGCTTAATGATGATTACTGGGCCACCTTGAATCGATATACTGTAAAAAACCACCATCAGAAGACAAGTAGGAGCAACCATTATGATTATGGCTATTGCAACCATTTTGAATTCTCAGGGCAGTATAAAGAGCAGGTTGATAGGTCTATTTATGCGAGGCCTGATACTTTGAATTCCATCAAGCCTCATAACTCTCAGTCTTTTAAGAGGAGGAAGTTCTCTGCTTCACGTTGGGAGGATAGTGGGAGAAACCATTGGCAGGCAAGGGCACATGATAGTGGACCTTCAATCTATAGCAACTTGGTCCATCCTCCTCCACGATCCAACAATGACGTCTCTACATCTGCCAGCTGTAAACGAGATCGCTCAATAATGGAAGACGATGAGCCTTTTTTTATGTCCAGGGATGAGATTGAGAGATGCTCACCTTCAAGAAGAGATGGTATTGATACAGTACGTGAAACACATCTGCGGTACACATATTGTGCCTTCCTTCAGAGTCTTGGTTTGCAGCTTGAGTTACCGCAGACTACCATTGGCACTGCAATGATTCTATGCCATCGGTTTTTTGTTCGAAGGTCACATGCTTGTCATGATAGATTTTTGATTGCCACATCTGCGCTCTTCCTTGCTGCGAAATCCGAGGAGACACCACGACCTTTGAACAATGTCTTGCGAGCTTCATGTGAAATTCTGCACAAACAGGATTTTAATCTCTTATCTTACATGCTCCCTGTTGATTGGTTTGAGCAATATCGAGAAAGAGTAACTGAGGCTGAGCAATTGATACTGACTACTCTGAACTTTGAACTCAACGTACAACATCCCTATGCTCCTCTTATTTCTGTCCTTAACAAGATAGGTCTTTCACAGTCCGTCTTGGTGAATCTTGCACTGAACTTGATCAGTGAAGGGTAA 954 43.19 MSRVRNFSSQGGMLNDDYWATLNRYTVKNHHQKTSRSNHYDYGYCNHFEFSGQYKEQVDRSIYARPDTLNSIKPHNSQSFKRRKFSASRWEDSGRNHWQARAHDSGPSIYSNLVHPPPRSNNDVSTSASCKRDRSIMEDDEPFFMSRDEIERCSPSRRDGIDTVRETHLRYTYCAFLQSLGLQLELPQTTIGTAMILCHRFFVRRSHACHDRFLIATSALFLAAKSEETPRPLNNVLRASCEILHKQDFNLLSYMLPVDWFEQYRERVTEAEQLILTTLNFELNVQHPYAPLISVLNKIGLSQSVLVNLALNLISEG 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2286626 2294714 + Hsped.03g01820.1 Hepe03g0182 565180

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0182 317 FunFam Cyclin-T1-2 126 309 - -
Hepe03g0182 317 SMART cyclin_7 175 277 IPR013763 -
Hepe03g0182 317 PANTHER CYCLIN 139 316 IPR043198 GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0008024(PANTHER)|GO:0016538(InterPro)|GO:0016538(PANTHER)|GO:0032786(PANTHER)|GO:0061575(PANTHER)
Hepe03g0182 317 Pfam Cyclin, N-terminal domain 157 284 IPR006671 -
Hepe03g0182 317 Gene3D - 126 309 - -
Hepe03g0182 317 MobiDBLite consensus disorder prediction 114 131 - -
Hepe03g0182 317 SUPERFAMILY Cyclin-like 143 285 IPR036915 -
Hepe03g0182 317 MobiDBLite consensus disorder prediction 96 131 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0182 K15188 - - csv:101216477 607.446
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0182 Hepe-Chr3:2286626 Hepe07g1647 Hepe-Chr7:57711397 4.58e-53 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g468 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed04g1886 . . . Cma17g00250 . . . Cpe17g00140 Bhi12g01731 Tan06g2538 Cmetu05g0588 . Hepe03g0182 . Lcy13g0265 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006517 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38