Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0191 ATGAGTTTAATTCCCATGGCTCTCTCAATTACAATCCTCCTCTTTCTCTTCATATCCATTCCTTCAATCTTCTCTCATCCATTCGACTCTCTATCTCCTCTCGAGATTCAAATCGTCACCTCCACAATCAAATCCAAATTATTCAACCTCGGCCCAACCCCAAACCTCACCTTTCACTACATCGGCATCGACGAGCCCAACAAACCCGCCGTCCTCTCCTGGCTGGCAAACCCCCGGTCCCCGCCTCCGCCACGCCAAGCCTTCGCCATCGTACGCGCCAACAAGCAGACTCACGAGTTCGTCGTGAGCCTAGCTGGTGGCCGCGGCTCGATTATATCGGAGCATGTGTATCAAGGCACCGGTTTCCCAACACTGACCATTGAGGAACAGTCAGAAGCCATTGAGTTGGCCCTGAAACACCCACCTTTTATATCCTCCATTCAGAAAAGAGGGCTGAATGTTTCGAATATTGTTGGGTCTGTTTTTACTGTTGGGTGGTACGGACAACCTCAAAGTGAGACCAAACGAGTTGTGAAGGTTTTGTTTTTCTGTAAGGAATCTTCGGTGAATGTTTGGGTGAGGCCAGTTGAGGGTGTTGAAACGGAGGTGGATCTTGATGAAATGGTGGTGACGGAATTTAAAGACTTTCGAGTTTATGTTATGCCGAAGAGTGAGGGAACGGAGTATCGAGCTTCCGGTATGCGGCCGCCGTATGCGGCGGAGACCAAGCCGATTATTGTTACTCAGCCGCTTGGTCCCAGCTTTGTGGTTAGAGGCCATACAGTCAGCTGGGCGAATTGGGATTTTCACTTAGGGTTTGACATGCGAGTTGGAATCGTAATATCAACGGCGTCGATATACGACATCGACCAAGGTAAAAAACGACAAGTTCTTTATCAAGGCTGCATTTCCGAGCTGTTTGTACCGTACCAAGATCCGACGGAGGAGTGGTTTTACCGGACGTTTTTGGACGCCGGAGAGTTTGGGATGGGGTCGTCGGCAGTAAAGCTGGAGCCCCTTCACGACTGTCCACCCAACGCCGTCTTCTTCGACGCCTTCTACGCCGGCCAAGACGGAAAGCCGGTGAAGTTGTCAAATGCGTATTGTATGTTTGAGAAGTACGCCGGAAATATTGCTTGGCGCCACACTGAGAGTGTCATTCCGGGAGAGTTGGTGAGTTTAACAGGCATCATGGAAGTGAAAACGACGCCGTATAAACACACGAGCGAGATAAAAGAGGAAATCTATGGCGTATTAGCAGCCCCAAACTCAATCGGCGTAAACCATGACCATTTCATCACATATTATCTTGATCTCGACATCGATGGCCAGCAAAATTCCTTTGTTAAAGCCAAACTAAAGAGCTTCAAAACTGATGGCTCCACGCCGAGGAAGAGCTACTGGTCGGTGGTGGAGGAGGCGGTGGAGAAGGAGCTCGACGCCAGACTCCGCCCGACGGAGCCAGCGGAGCTGAACATCGTGAACCCCAATAAAGAGACTGCAATAGGGAACAAAGTCGGGTATCGTTTAATTCCGGGGCCGATGGCTGTACCGCTCCTTTCGGATGACGATTATCCACAGATTCGAGGAGCACTCTGTGATTATACTATATGGATTACACCTTATAATCGGTCAGAGAAATGGGCTGGTGGTATGTACGTTGATCGTGGTCATGGCGACAAGACCCTTCCCATTTTAACACAAAGGAATAGAGACATCTACAACAAGGATATTGTGTTATGGCACACAATAGGGTTTCACCATCATCCTAGTCAAGATGAATTTCCAATAATGCCCACCCTCACTGGAGCCTTCGAACTTCGACCTACAAACTTCTTTGAAAGAAATCCAATTCTCAAAATGAAGGCTCCATAA 1875 48.85 MSLIPMALSITILLFLFISIPSIFSHPFDSLSPLEIQIVTSTIKSKLFNLGPTPNLTFHYIGIDEPNKPAVLSWLANPRSPPPPRQAFAIVRANKQTHEFVVSLAGGRGSIISEHVYQGTGFPTLTIEEQSEAIELALKHPPFISSIQKRGLNVSNIVGSVFTVGWYGQPQSETKRVVKVLFFCKESSVNVWVRPVEGVETEVDLDEMVVTEFKDFRVYVMPKSEGTEYRASGMRPPYAAETKPIIVTQPLGPSFVVRGHTVSWANWDFHLGFDMRVGIVISTASIYDIDQGKKRQVLYQGCISELFVPYQDPTEEWFYRTFLDAGEFGMGSSAVKLEPLHDCPPNAVFFDAFYAGQDGKPVKLSNAYCMFEKYAGNIAWRHTESVIPGELVSLTGIMEVKTTPYKHTSEIKEEIYGVLAAPNSIGVNHDHFITYYLDLDIDGQQNSFVKAKLKSFKTDGSTPRKSYWSVVEEAVEKELDARLRPTEPAELNIVNPNKETAIGNKVGYRLIPGPMAVPLLSDDDYPQIRGALCDYTIWITPYNRSEKWAGGMYVDRGHGDKTLPILTQRNRDIYNKDIVLWHTIGFHHHPSQDEFPIMPTLTGAFELRPTNFFERNPILKMKAP 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2455145 2461583 + Hsped.03g01910.1 Hepe03g0191 565189

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0191 624 Gene3D - 24 123 - -
Hepe03g0191 624 SUPERFAMILY Amine oxidase N-terminal region 24 107 IPR016182 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Hepe03g0191 624 SUPERFAMILY Amine oxidase catalytic domain 235 621 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Hepe03g0191 624 Gene3D - 124 220 - -
Hepe03g0191 624 PANTHER COPPER AMINE OXIDASE 25 385 IPR000269 GO:0005507(InterPro)|GO:0005507(PANTHER)|GO:0008131(InterPro)|GO:0008131(PANTHER)|GO:0009308(InterPro)|GO:0009308(PANTHER)|GO:0048038(InterPro)
Hepe03g0191 624 Pfam Copper amine oxidase, N2 domain 26 107 IPR015800 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Hepe03g0191 624 FunFam Amine oxidase 24 123 - -
Hepe03g0191 624 Pfam Copper amine oxidase, N3 domain 123 217 IPR015802 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Hepe03g0191 624 Gene3D Copper amine oxidase, catalytic domain 237 390 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Hepe03g0191 624 Pfam Copper amine oxidase, enzyme domain 246 385 IPR015798 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Hepe03g0191 624 Pfam Copper amine oxidase, enzyme domain 392 618 IPR015798 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Hepe03g0191 624 Gene3D Copper amine oxidase, catalytic domain 391 624 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Hepe03g0191 624 SUPERFAMILY Amine oxidase N-terminal region 121 230 IPR016182 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0191 K00276 - - csv:101222468 1037.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0191 Hepe-Chr3:2455145 Hepe03g0194 Hepe-Chr3:2500881 3.31e-229 dispersed
Hepe03g0191 Hepe-Chr3:2455145 Hepe03g0192 Hepe-Chr3:2482179 1.99e-191 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g480 . Blo12g00326 . . . . Bma04g00788 . . Cmo17g00227 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g01716 Tan06g2527 . Lac12g2288 Hepe03g0191 . Lcy13g0276 . . . . . . . Lsi09g01326 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000717 1 5 2 3 1 3 2 4 3 4 3 3 3 3 5 4 3 1 2 3 4 3 4 4 5 4 2 7 2 4 97