Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0193 ATGACTCTTCCTCTGTTTCTCCTTGTAGTCCTTCACCTTCATTTCTCGGCGGCGGCGCCGCCTCTTTTCCATCCGCTCGACCCCCTAAACCCGGCCGAGCTCGACCAAATAAGGCTCGCGGTCCAGAAATCCCACCTGGGAAAGCTCCCAAATCTCACATTCCACTTCGTGGACTTGGAAGAACCAGAGAAGAAAGATGTTCTTTCCTGGCTCTCATCCAGTGATCAAAACAACCCCCTCCACCGCCCGCCCCGCCGCGCCAACGTCGTCGTCCGAGCCGCCGATTCCACCCACGAACTACTTGTAGACTTAGCCACTCGCTCAATTAAATCCCACCATGTCTACAACGGCCATGGCTATCCTCCTCTCACTTTTCTCGAGCTCTTCCAAGCTAGCAAATTACCTCTCAATTTCCCCAAATTCAAAGCTTCCATTCAAAGACGAGGCTTGAATTTATCTCATGTTTCTTGCATCCCATTCACAGTTGGCTGGTACGGCGAGAAAACAACCAAAAGGCTTCTGAAAGCTGCGTGTTTTTACAGAGAAGGAACCAGCAATGTCTTCTCCCGGCCGATCGAAGGAATCCTTACACTAATCGACGTCGATTCGATGAAAATCATCGACTTCTCCGACAGATTCACCGCCCCTTTACCAAAATCAGATGGCACCGATTACAATTCAAAGAAAACAGAGCCCAATTCCTCGAATTGCAACGCCGGAAAAAGAAGATTCGCCGTCGAAGGAAATCAAGTGAAATGGGAAAACTGGGTTTTCCATATTGGATTCAATGCCAGAGCCGGAGTTATTATCTCTACGGCCTCGATTTTCGACGACGAGAAGAAGATATTCCGACGAGTGCTTTACAGAGGACATATTTCAGAGACGTTCGTGCCGTATATGGATCCGACGAAGGAATGGTACTTTAGAACTTTCATGGATATCGGAGAGTTTGGATTTGGGCGGGCGGCGGACACTCTGCAGCCGCTGATTGACTGCCCGGAAACCGCCGTGTATATCGACGGATACATGGCCGGCGCCGATGGGCGACCGCAGAAGGTGTCGAGAGCCATTTGTATCTTTGAACGCAATTCGGGAGATGTTTTGTGGAGACATACTGAGATTAATATTCCTGGCAAAGTGATTAGACGTGGGGAGGCTGAGAGGAGTTTGGTGGTCAGAATGGTGGCAAGTGTTGGGAATTATGACTATGTTCTTGACTGGGAATTCAAAAGGAGTGGCTCTATTAAAATTGGGGTTGCTTTAACGGGGTTATTAGAGGTGAAAGCCACACCGTACACAAATAACCTCAATATAACCGAAGAAACATACGGAACTCTAATCGCCGACAACACAGTGGCCGTCAACCACGACCATTACCTAACCTATTATCTCGACCTCGACGTTGACGGCGCCGCCAACTCCTTCATCAAAGCCAAGCTTATAACAGCGACGACAACGACGGAACCCAGGAAAAGTTACTGGAAAGTTGTCAGAGAAACAATCAAAACCGAAACTGAAGCCAAACTTCAGCTCGGTTCCGACCCGGCGGAGCTCTTGTTCGTCAACCCTAATAAGAAGACAAAGATTGGGAATCCGGTTGGTTACCGGCTGATCACCGGCCAACCGGTTAATTCTCTACTGGCCGACGATGATTACCCTCAGATTAGAGCGGCTTACACCAAGTACCCTTTGTGGGTGACTCCCTATAACAAGTCGGAGAGATGGCCGGCCGGGTTTTACGCCGATCGGAGCCGTGGGGATGATGGCTTAGCCGTTTGGGCCAAAAGGAACAGAGGAATTGAGAATAAAGATATTGTTTTATGGTACACGGTGGGGTTCCATCACAGCCCATGCCAAGAAGAGTTTCCGGCGATGACCGCCCTCCACGGCGGCTTCGAGCTCCGACCAGCTAATTATTTTGATAGAAATCCTTTGCTTAAATGA 1944 49.38 MTLPLFLLVVLHLHFSAAAPPLFHPLDPLNPAELDQIRLAVQKSHLGKLPNLTFHFVDLEEPEKKDVLSWLSSSDQNNPLHRPPRRANVVVRAADSTHELLVDLATRSIKSHHVYNGHGYPPLTFLELFQASKLPLNFPKFKASIQRRGLNLSHVSCIPFTVGWYGEKTTKRLLKAACFYREGTSNVFSRPIEGILTLIDVDSMKIIDFSDRFTAPLPKSDGTDYNSKKTEPNSSNCNAGKRRFAVEGNQVKWENWVFHIGFNARAGVIISTASIFDDEKKIFRRVLYRGHISETFVPYMDPTKEWYFRTFMDIGEFGFGRAADTLQPLIDCPETAVYIDGYMAGADGRPQKVSRAICIFERNSGDVLWRHTEINIPGKVIRRGEAERSLVVRMVASVGNYDYVLDWEFKRSGSIKIGVALTGLLEVKATPYTNNLNITEETYGTLIADNTVAVNHDHYLTYYLDLDVDGAANSFIKAKLITATTTTEPRKSYWKVVRETIKTETEAKLQLGSDPAELLFVNPNKKTKIGNPVGYRLITGQPVNSLLADDDYPQIRAAYTKYPLWVTPYNKSERWPAGFYADRSRGDDGLAVWAKRNRGIENKDIVLWYTVGFHHSPCQEEFPAMTALHGGFELRPANYFDRNPLLK 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2490058 2499759 - Hsped.03g01930.1 Hepe03g0193 565191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0193 647 Pfam Copper amine oxidase, enzyme domain 242 645 IPR015798 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Hepe03g0193 647 SUPERFAMILY Amine oxidase N-terminal region 22 118 IPR016182 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Hepe03g0193 647 Pfam Copper amine oxidase, N2 domain 24 113 IPR015800 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Hepe03g0193 647 Gene3D Copper amine oxidase, catalytic domain 244 647 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Hepe03g0193 647 Pfam Copper amine oxidase, N3 domain 121 213 IPR015802 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Hepe03g0193 647 PANTHER COPPER AMINE OXIDASE 23 647 IPR000269 GO:0005507(InterPro)|GO:0005507(PANTHER)|GO:0008131(InterPro)|GO:0008131(PANTHER)|GO:0009308(InterPro)|GO:0009308(PANTHER)|GO:0048038(InterPro)
Hepe03g0193 647 SUPERFAMILY Amine oxidase catalytic domain 240 646 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Hepe03g0193 647 FunFam Amine oxidase 244 647 - -
Hepe03g0193 647 Gene3D - 23 121 - -
Hepe03g0193 647 FunFam Amine oxidase 122 215 - -
Hepe03g0193 647 SUPERFAMILY Amine oxidase N-terminal region 119 225 IPR016182 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Hepe03g0193 647 Gene3D - 123 215 - -
Hepe03g0193 647 ProSitePatterns Copper amine oxidase topaquinone signature. 390 403 IPR049948 -
Hepe03g0193 647 FunFam Amine oxidase 22 121 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0193 K00276 - - csv:101222232 1142.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0193 Hepe-Chr3:2490058 Hepe06g1640 Hepe-Chr6:67270799 1.25e-189 dispersed
Hepe03g0192 Hepe-Chr3:2482179 Hepe03g0193 Hepe-Chr3:2490058 1.13e-171 tandem
Hepe03g0193 Hepe-Chr3:2490058 Hepe03g0194 Hepe-Chr3:2500881 5.48e-249 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g485 . Blo12g00327 . . . . . . . . . . . . . . . . . . . . . . Cla06g00580 Cam06g0618 Cec06g0620 Cco06g0626 Clacu06g0605 Cmu06g0598 Cre06g1366 . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g01714 . . Lac12g2284 Hepe03g0193 . Lcy13g0278 . . . . . . . Lsi09g01324 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000717 1 5 2 3 1 3 2 4 3 4 3 3 3 3 5 4 3 1 2 3 4 3 4 4 5 4 2 7 2 4 97