Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0194 ATGACTAAACTTAAACGACCGTCCAAGCTCTTCCACTTCTTCTTCCTCCCACACCTCATTTCTCTTATCTCCGTCGCCGCCAGCCGCCACCCTCTGGACCCTCTCTCTCCGGCCGAGTTCGAACTCATCCGATCACTCATCACCAACTCTTCCACCCCGAACATCACCTTCCAATACGTCGCCCTCGCCGATCCCGACAAACAATCCCTCCTCAAATGGCTCTCAAATCCCAAAACCCCGCCACCGCCCCGCCGCGCCATCGCCACCGTCCGTTTCAAGAAATCCACCCACGAGTTCCTCATAGACTTAACTCAAAACTCCATCCTCTCGAACCGGGTCTACACCGGGCCGGCATACGCGCCGTACACAATCGAGGAGCAATTCGCCGCCGCCGCTCTGCCGCCGTTCCACCCGGCGTTCGCGGCGGCGATGAAAAAGAGAGGCCTGAAAATGGAAGAGGTGGTTTGCGCGTGTTTTAGCGTTGGGTGGTTCGGAGAAAAGGAGAAGCAGAAGAGGAGTGTGAAAGTTCAGTGTTATTATTTGGATGGGAGCGTGAATTTGTACATGAGGCCTGTGGAAGGCGTGACGGTGACCGTCGATCTTGATGAGATGAAGATTATTGGGTTTCGGGATAGATATACGGTTCCGATTCCGAAGACTGGTGGGACTGAGTATAGAGAATCAATGCTCAAGCCGCCGATTCTGCCGCCTTTGAACGGAATCAAGATGGTGCAGCCGGAAGGCCCCAGCTTCAAAGTCGATTGCCACTCCGTTAGTTGGGCGAACTGGAAATTCCATTTGAGCTTCGACGAGAAAGCAGGGTCAATCATATCGCTAGCATCAATTTATGACATAGAAAAGAAAAGGCAGCGACAAGTATTGTACAGAGGGTTCATATCGGAGCTGTTCGTGCCGTACATGGACTTAAACGAAGAATGGTACTACCGGACGTTTTTCGACGTCGGCGAGTACGGCTTCGGGCAGTCTGCAGTGCCGTTGGAGCCACTCAGAGACTGCCCGGAGAATGCGGTGTTCATGGACACGTACATGGCGGCCGGAGATGGGAGGCCGGTGAAGATGACCAACACTTTTTGTATATTTGAACGCAACGCCGGTGATATCATGTGGCGCCATACGGAGGGCACCATTCCGAATACAATCATTAGTGAGACGAGAGCGGAAGTGAGCTTGGTGGTGAGGATGGTGGCGGCTGTGGGCAATTATGATTATATTGTGGACTGGGAATTTAAGCAGAGTGGCTCCATTATTGCTAATGTTGGATTAACCGGATTGCTAGAAGTGAGAGGATCAAAATACACTCACAACGACCAAATAAAAGGGGAAGTCTACGGCTCACTATTAGCCGAGAATACAATCGGCGTCCGCCATGACCACTTCCTCCTCTACCACCTCGATCTCGACGTCGACGGCGACGCCAACTCCTTCGTCAAATCCAACCTCCGCACAGTCCGATCGCCGGACCCCAATTCCCCACGGCGGAGCTATTGGACGGTCGTCGCCGAAACCGCCAAAACAGAGGCCGACGCCAGGATCAAATTCGGCCTCCAAGAGGCCGAATTGGTGATCGTGAATCCCAATCGGAGAACTAGAATCGGGAATCCCGCCGGCTACCGTCTGATTCCGAAGTCGGCGGCGGGTTCCCTTTTGAATTTGGATGATTACCCACAAATTAGAGGAGCGTTTTCGAATTATAATGTTTGGATTACACCGTATAATTGCTCGGAGAAATGGGCTGCCGGGATTTTTACTGATCAGAGCCGTGGAGATGATACCTTGGCTACTTGGAGTCTCAGGAACAGGGAGATAGAGAACAAGGACATAGTGATGTGGTACACCATGGGATTTCATCATGTGCCTTGCCAAGAAGATTTCCCATTGATGCCAACTTTGAGCAGTGGGTTTGAGTTGAGACCAACCAATTTCTTTGAGAGCAATCCTGTTCTTAAAGTCACCCCACCCCAGGTAGCCAACTGGTCCTATTGCTAA 2007 51.87 MTKLKRPSKLFHFFFLPHLISLISVAASRHPLDPLSPAEFELIRSLITNSSTPNITFQYVALADPDKQSLLKWLSNPKTPPPPRRAIATVRFKKSTHEFLIDLTQNSILSNRVYTGPAYAPYTIEEQFAAAALPPFHPAFAAAMKKRGLKMEEVVCACFSVGWFGEKEKQKRSVKVQCYYLDGSVNLYMRPVEGVTVTVDLDEMKIIGFRDRYTVPIPKTGGTEYRESMLKPPILPPLNGIKMVQPEGPSFKVDCHSVSWANWKFHLSFDEKAGSIISLASIYDIEKKRQRQVLYRGFISELFVPYMDLNEEWYYRTFFDVGEYGFGQSAVPLEPLRDCPENAVFMDTYMAAGDGRPVKMTNTFCIFERNAGDIMWRHTEGTIPNTIISETRAEVSLVVRMVAAVGNYDYIVDWEFKQSGSIIANVGLTGLLEVRGSKYTHNDQIKGEVYGSLLAENTIGVRHDHFLLYHLDLDVDGDANSFVKSNLRTVRSPDPNSPRRSYWTVVAETAKTEADARIKFGLQEAELVIVNPNRRTRIGNPAGYRLIPKSAAGSLLNLDDYPQIRGAFSNYNVWITPYNCSEKWAAGIFTDQSRGDDTLATWSLRNREIENKDIVMWYTMGFHHVPCQEDFPLMPTLSSGFELRPTNFFESNPVLKVTPPQVANWSYC 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2500881 2507551 - Hsped.03g01940.1 Hepe03g0194 565192

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0194 668 Gene3D - 122 215 - -
Hepe03g0194 668 FunFam Amine oxidase 251 666 - -
Hepe03g0194 668 Pfam Copper amine oxidase, N3 domain 122 217 IPR015802 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Hepe03g0194 668 SUPERFAMILY Amine oxidase N-terminal region 119 226 IPR016182 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Hepe03g0194 668 SUPERFAMILY Amine oxidase N-terminal region 29 116 IPR016182 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Hepe03g0194 668 Gene3D - 28 120 - -
Hepe03g0194 668 PANTHER COPPER AMINE OXIDASE 24 661 IPR000269 GO:0005507(InterPro)|GO:0005507(PANTHER)|GO:0008131(InterPro)|GO:0008131(PANTHER)|GO:0009308(InterPro)|GO:0009308(PANTHER)|GO:0048038(InterPro)
Hepe03g0194 668 Pfam Copper amine oxidase, N2 domain 30 113 IPR015800 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Hepe03g0194 668 FunFam Amine oxidase 122 215 - -
Hepe03g0194 668 Gene3D Copper amine oxidase, catalytic domain 251 667 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Hepe03g0194 668 Pfam Copper amine oxidase, enzyme domain 241 655 IPR015798 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Hepe03g0194 668 SUPERFAMILY Amine oxidase catalytic domain 229 663 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Hepe03g0194 668 ProSitePatterns Copper amine oxidase copper-binding site signature. 619 632 IPR049947 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0194 K00276 - - csv:101210998 1126.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0191 Hepe-Chr3:2455145 Hepe03g0194 Hepe-Chr3:2500881 3.31e-229 dispersed
Hepe03g0192 Hepe-Chr3:2482179 Hepe03g0194 Hepe-Chr3:2500881 9.36e-176 dispersed
Hepe03g0194 Hepe-Chr3:2500881 Hepe06g1640 Hepe-Chr6:67270799 5.45e-213 dispersed
Hepe03g0193 Hepe-Chr3:2490058 Hepe03g0194 Hepe-Chr3:2500881 5.48e-249 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g486 . . Bda03g00890 . Bpe04g00834 . Bma04g00786 . Cmo08g01122 Cmo17g00225 . . . . . . . . . . . . . . Cla06g00581 Cam06g0619 Cec06g0621 Cco06g0627 Clacu06g0606 Cmu06g0599 Cre06g1367 . . . Cone4ag0238 . . . . . . . . . . . . Sed01g3969 . . Cma08g01145 Cma17g00239 Car08g01028 Car17g00217 Cpe12g00201 . Bhi12g01713 Tan06g2525 Cmetu01g1582 Lac12g2283 Hepe03g0194 . Lcy13g0279 . . . . . . . Lsi09g01323 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000717 1 5 2 3 1 3 2 4 3 4 3 3 3 3 5 4 3 1 2 3 4 3 4 4 5 4 2 7 2 4 97