Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0198 ATGGAGGACGGTGTGAGATCTGGGGGTCCGTCGGGGGTTTTGGTGAAGACTAGGAACTCGTCCGGTTGCTTAATTGTTAGAAAAAAAGAGGATGGGTTAGGAGGTGCGGGTTCTTCGAACTCACGCTTGGTTAATGCAAAGAAGGAGAAGAAGAGACCTAGGTTGGTTTTGAGTGATTCTGGGTCTAGTGATGAGGTATTGCTGCCCCATCGCAGACGGGTTGGTCCTGAAACCATTCGGGTTTGTAATGGTTTGAATTCTTTTGAGAAGGATGTTATGGAGGAGAGCGGAAGTAGTATCAGAAAGAAGGATAGGTTGCAGTACGTGAAGCGGAATGACATGGATGTGGATGGTTTACAAAGAAATATTGACACCTTAGATGTCTTTGAGTTCAACGAGTACGATGAAACGGACGGTGAGACTAGGCGGAGGAAGCATTTTAATGGCAGTGGAGAGAGACGTTTTCTTGGTTCCATGAACCTGCCTCAAGGTGGTGTCGAGAGGGAATTTGGAACCACTTCTAGCAGGCATGCTTTGGTGGACAAGAGAAAGAATTTGTATGCAGAACAAACCAGTAGCTTTGATCGGGACAGGCCTCCCAGAAAGATTAATTTTGACACAGATAATGACGGAGGAGCTCATGTTCCAACATCCTCGTTGAGAGATAAGTTTAGGGGTCATTCCGATGAAGCAATCAGGGTTCAGGGAAAAAATGGAGTTTTAAAGGTCATGGTAAACAAGAAGAAGAATGTGAGTGGAGCTCCCGATATGTATGATCATCGCAAATTAGAAGAAAGTAGAAAGAGTCTAAGGACTGAAGATACTCTGAAGAGGAAAGTGCCAGTTACTCCTTCAGTTTACCCGGAAACTAAGCCTCATGTGAAACAGGATCCCTTTTCTAAGCCAGAGAAGGACCATACAGATTTTCAAACATCAGCATCAACAAAAAATGGAAAGGGTTGCAGTTGGGATTCAGGTGATAGCAGTGTATCATTGAAGCCCAGAAAAAAGGTTGTTGAAGCTCAAAAATCTACCAAGAGGGTAAGCTGTGAAGTTGAAAAAATTCCATGCGAAGAGACTCCCCGGAGTACAGCAAAAGAAGGAAAAGTAAAACGAGGCAGTGGAACAGAGAAACAAAAGCTACGTGAAAAGATCAGGGGAATGCTCCTTGGTGCTGGTTGGAAAATCGATTACAGACCTAGAAGGAACAGAGATTATTTAGATGCTGTCTATGTTAATCCCACTGGAACAGCTTATTGGTCAATTATTAAGGCTTATGATGCCCTTCAAAAGCAATTAAATGAAGAAGGAGCAGAGGCTAAACCTAGTCCTGATGGTTCATTTACGCCAATAGCAGATGATATTCTCAGTCAATTAACCAGGAAAACTCGAAAGAAAATTGAGAAAGAACGGAAAAATAAGCAGAGAGATGATAGTGATAGTGAAAATGCCAAAGAAGCAAGCGCACTGAGATCTGCTGGTACAAAAAATGACATGGACAGCATGGACAGTGATAGCAATGAAGAAAAATTAAGCTCTTTCATTAAGCAGGGTGGAAAATCTTTTAAAAATAAATTGAACGAGAATGGGTTTCCCAGTATCAACTCAAAAGGTCAAAGTTCTAGTAAGTATTCACGTGATACCATTGTAAAACCTTCTTCTGGATCCAATTCACGTATTTTACATGGAAGAAGAGGTAGAAAGCTTGGATTGTTAGTTCGTGGCTCTAGTAGGGGATTGGATTCAGAGAATGATGGTTTTGTTCCATATACTGGGAAAAGGACTCTGCTCTCCTGGCTTATTGATTCTGGAACTGTTCAGTTGAGCCAAAAGGTACGGTACATGAACCGCAGACAGACCCGGGTGATGCTGGAGGGGTGGATTACCAGAGACGGCATTCATTGCGGTTGCTGTAGCAAAATCCTCACTGTCTCGAAGTTTGAGATACATGCTGGAAGCAAACTACGCCAACCCTTTCAAAACATCTTTTTGGAGTCTGGGGTTTCTCTTCTGCAGTGCCAGAAAGATGCATGGAATAGACAGGAGGAGTCTAAACTTCTCAGTTTCCACACAGTTGAAATTGACGGTGATGATCCGAATGACGATACTTGTGGTATCTGTGGAGATGGTGGAGACTTAATCTGTTGTGATGGGTGTCCATCAACTTTTCATCTGAGTTGTTTAGATATTCAGATTCCTCCAGGGGATTGGCACTGCCCAAATTGTACTTGCAAGTATTGTGGAGAAGCTAGTGTTGATATTTCTCAGGGAGACAATAGCATTGTTCCTGAGATACCTAGTTGCATGCTATGCGAAAAAAAATTTCATGAATCCTGCAGTCCGGAGATGGATACTCCTGTTCATTCCAATGGTTCAGTCACTTCTTTTTGTGGCAAGAATTGCAGAGAGATTTTTGAGAACTTGCAGAAGTATCTTGGGGTGAAACATGAATTAGATGCAGGATTCTCATGGTCTCTTGTCCGTAGAACAAGTGAAGATTCGGATGCATCTGTTCGTGGACTTTCTCAAAGGATTGAATGCAACTCTAAACTGGCTGTTGCATTGACAGTTATGGATGAATGCTTTTTGCCTATTGTTGACAGGAGGAGTGGGATAAATCTAATTCATAATGTTCTTTATAACTGTGGATCAAACTTTTATAGGCTGAATTATAGTGGCTTCTACACTGCTATTTTGGAAAGGGGTGATGAAATCATCTCTGCAGCAACAATTAGGTTTCATGGGACTAAGTTAGCTGAGATGCCATTCATCGGAACCCGCCATATATATAGACGCCAAGGAATGTGCCGTCGGCTTTTTTGCGCACTTGAATCTGCTCTCCGCATGCTTAAGGTTGAGAAACTGATTATACCAGCAATCGCTGAGCTCATGCATACATGGAATGTGATTTTTGGCTTTAGTCCTTTGGAGCAATCACTCAAGCAAGAAATGAGATTGATGAATATGTTGGTGTTCCCTGGGACAGATATGTTACAGAAGTTGTTAATCCAAGAGACAATTGTTGAGGATAATGCTTCTACTGGCTCAGGTGCAAAGCAAACGGATTGTAGAAGTACAGAGTTTAGTAGTCCTAAGATGGATACAGAGACCTCATCTGGGCATGAACCTCAAAGTTGTGATGACACTGAACAGCATAACTCCAAGGAGAAAACAAATGAAGCAACTGTCACTAACCCGAATCCCGAATCCATGTCTGTTTCTCCAAATGATACTTATGTGGCAAATAGTTCTCTGGATGCATTTTGTGAAGTTAAAACTTCATGTTCTCCAATGCAAACCGTAAATTCAGATTCTGATTCTGGTGATAAATTAGCTAAATGTTCCTCGGACAGGAAATGTTCATCTCCATCCGATGCAACGTGTGACTCTCTTCGAACCAAAAATAAGCATGGTATAGAGGACCATTCGCAGTCCACATCCCAATGTATGGCAGGTGATATCTCTTCAGACAGTTTTCTTGAACCTACGGTTACAGTTTCAGATGAAGGAATCATTTGTTCCAACTCTCATGCTGGGCACAAGTTGGTTAAATCTGGTTCTGAGAAGAAATCTTCTCCTACATTGGGCAATGGCGCCGATGAGTTTGAAAACAACGTACCCGTAATGGATTCTCCTGAAGATGAGTCTTTGAATAAGATTAATGGTCATGAATTCCTTGAAGACGATGCACATGCTAATGTTCTTAAACCTGCTCATTTGATTGAAAATTTTGCCAATGGCATTGTCAGTGAAAATCCACTCGTCTCTTCTGCTGATTTGTGTGGCGCTAATGGACGCCCCTTCGAAATTATACCTAATTGCGAAAATACAATAACTTATGGGAAAGAAGCTATTTCTGATGGAATTTGTGACAGTGAAAAATCTCCACAGTCATGTGGGGCAAAAGGCAGAGGCGATTCGCAGGAAGAGAGAGCTGAATCTGGTTCGGTTTGA 3954 42.06 MEDGVRSGGPSGVLVKTRNSSGCLIVRKKEDGLGGAGSSNSRLVNAKKEKKRPRLVLSDSGSSDEVLLPHRRRVGPETIRVCNGLNSFEKDVMEESGSSIRKKDRLQYVKRNDMDVDGLQRNIDTLDVFEFNEYDETDGETRRRKHFNGSGERRFLGSMNLPQGGVEREFGTTSSRHALVDKRKNLYAEQTSSFDRDRPPRKINFDTDNDGGAHVPTSSLRDKFRGHSDEAIRVQGKNGVLKVMVNKKKNVSGAPDMYDHRKLEESRKSLRTEDTLKRKVPVTPSVYPETKPHVKQDPFSKPEKDHTDFQTSASTKNGKGCSWDSGDSSVSLKPRKKVVEAQKSTKRVSCEVEKIPCEETPRSTAKEGKVKRGSGTEKQKLREKIRGMLLGAGWKIDYRPRRNRDYLDAVYVNPTGTAYWSIIKAYDALQKQLNEEGAEAKPSPDGSFTPIADDILSQLTRKTRKKIEKERKNKQRDDSDSENAKEASALRSAGTKNDMDSMDSDSNEEKLSSFIKQGGKSFKNKLNENGFPSINSKGQSSSKYSRDTIVKPSSGSNSRILHGRRGRKLGLLVRGSSRGLDSENDGFVPYTGKRTLLSWLIDSGTVQLSQKVRYMNRRQTRVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIFLESGVSLLQCQKDAWNRQEESKLLSFHTVEIDGDDPNDDTCGICGDGGDLICCDGCPSTFHLSCLDIQIPPGDWHCPNCTCKYCGEASVDISQGDNSIVPEIPSCMLCEKKFHESCSPEMDTPVHSNGSVTSFCGKNCREIFENLQKYLGVKHELDAGFSWSLVRRTSEDSDASVRGLSQRIECNSKLAVALTVMDECFLPIVDRRSGINLIHNVLYNCGSNFYRLNYSGFYTAILERGDEIISAATIRFHGTKLAEMPFIGTRHIYRRQGMCRRLFCALESALRMLKVEKLIIPAIAELMHTWNVIFGFSPLEQSLKQEMRLMNMLVFPGTDMLQKLLIQETIVEDNASTGSGAKQTDCRSTEFSSPKMDTETSSGHEPQSCDDTEQHNSKEKTNEATVTNPNPESMSVSPNDTYVANSSLDAFCEVKTSCSPMQTVNSDSDSGDKLAKCSSDRKCSSPSDATCDSLRTKNKHGIEDHSQSTSQCMAGDISSDSFLEPTVTVSDEGIICSNSHAGHKLVKSGSEKKSSPTLGNGADEFENNVPVMDSPEDESLNKINGHEFLEDDAHANVLKPAHLIENFANGIVSENPLVSSADLCGANGRPFEIIPNCENTITYGKEAISDGICDSEKSPQSCGAKGRGDSQEERAESGSV 1317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2541351 2550161 + Hsped.03g01980.1 Hepe03g0198 565196

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0198 1317 MobiDBLite consensus disorder prediction 251 328 - -
Hepe03g0198 1317 Pfam Tify domain binding domain 626 677 IPR032308 -
Hepe03g0198 1317 MobiDBLite consensus disorder prediction 1097 1116 - -
Hepe03g0198 1317 MobiDBLite consensus disorder prediction 511 560 - -
Hepe03g0198 1317 CDD PHD2_CHD_II 704 742 - -
Hepe03g0198 1317 MobiDBLite consensus disorder prediction 1013 1040 - -
Hepe03g0198 1317 MobiDBLite consensus disorder prediction 435 561 - -
Hepe03g0198 1317 ProSiteProfiles Zinc finger PHD-type profile. 701 745 IPR019787 -
Hepe03g0198 1317 SMART PHD_3 703 743 IPR001965 -
Hepe03g0198 1317 ProSitePatterns Zinc finger PHD-type signature. 704 742 IPR019786 -
Hepe03g0198 1317 MobiDBLite consensus disorder prediction 28 61 - -
Hepe03g0198 1317 MobiDBLite consensus disorder prediction 1013 1077 - -
Hepe03g0198 1317 MobiDBLite consensus disorder prediction 44 58 - -
Hepe03g0198 1317 MobiDBLite consensus disorder prediction 294 310 - -
Hepe03g0198 1317 Pfam Domain of unknown function (DUF7028) 352 432 IPR054292 -
Hepe03g0198 1317 MobiDBLite consensus disorder prediction 486 500 - -
Hepe03g0198 1317 MobiDBLite consensus disorder prediction 190 220 - -
Hepe03g0198 1317 SUPERFAMILY FYVE/PHD zinc finger 691 747 IPR011011 -
Hepe03g0198 1317 Pfam PHD-finger 704 742 IPR019787 -
Hepe03g0198 1317 MobiDBLite consensus disorder prediction 1041 1057 - -
Hepe03g0198 1317 MobiDBLite consensus disorder prediction 458 485 - -
Hepe03g0198 1317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 691 803 IPR013083 -
Hepe03g0198 1317 MobiDBLite consensus disorder prediction 1291 1317 - -
Hepe03g0198 1317 PANTHER PHD FINGER PROTEIN 12 311 1108 - GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0140110(PANTHER)
Hepe03g0198 1317 MobiDBLite consensus disorder prediction 1183 1207 - -
Hepe03g0198 1317 MobiDBLite consensus disorder prediction 1058 1077 - -
Hepe03g0198 1317 MobiDBLite consensus disorder prediction 311 328 - -
Hepe03g0198 1317 MobiDBLite consensus disorder prediction 253 278 - -
Hepe03g0198 1317 MobiDBLite consensus disorder prediction 190 208 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0198 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1432 Hepe-Chr1:79528095 Hepe03g0198 Hepe-Chr3:2541351 9.61e-114 dispersed
Hepe03g0198 Hepe-Chr3:2541351 Hepe08g0937 Hepe-Chr8:8619712 1.03e-46 dispersed
Hepe01g1831 Hepe-Chr1:83246458 Hepe03g0198 Hepe-Chr3:2541351 2.67e-68 transposed
Hepe03g0198 Hepe-Chr3:2541351 Hepe03g2006 Hepe-Chr3:77340094 3.29e-185 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g496 . . . Bda08g00235 Bpe04g00832 . Bma04g00785 . Cmo08g01120 Cmo17g00223 . . . . . . . . . . . . . . Cla06g00583 Cam06g0621 Cec06g0623 Cco06g0629 Clacu06g0608 Cmu06g0601 Cre06g1369 Cone14ag0851 . . . . . . . . . . . Bpe05g00903 . . . Sed09g1123 . . Cma08g01143 Cma17g00236 Car08g01026 Car17g00215 Cpe12g00199 Cpe17g00147 Bhi12g01710 Tan06g0978 Cmetu01g0849 Lac12g2278 Hepe03g0198 . Lcy13g0282 . . . . . . . Lsi09g01321 . . Cme01g01562
Vvi7g89 . . . Bda10g00577 . . . . Cmo08g00335 Cmo17g01163 . . . . . Cpe17g00858 . . . . . . . . Cla09g00660 Cam09g0695 Cec09g0686 Cco09g0684 Clacu09g0704 . Cre09g0673 Cone17ag0558 Cone20ag0858 . . Lsi02g02282 Csa07g01711 . Cme01g02078 . . . . Bpe10g00402 . . . Sed09g1123 . . Cma08g00340 Cma17g01186 Car08g00305 Car17g01118 . Cpe12g01032 Bhi12g01710 Tan06g0978 Cmetu01g0849 Lac12g2278 Hepe03g0198 . Lcy13g0282 . . . . . . . . . Chy01g01576 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006686 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55201 PF16135 TDBD 2.40E-22 No_clan Hepe TR