Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0226 ATGAGTGCTGGCACGGCGACGTTCCGGTCTATACTCGACAAACCCCTCAACCAGTTGACGGAGGATGACATTTCGCAGCTCACTCGAGAGGATTGTCGCAAATACCTAAAAGAAAAAGGAATGCGGCGGCCCTCGTGGAACAAATCTCAGGCGATCCAGCAAGTTATTTCTCTCAAAGCATTGCTTGAACCTTGTGATGATTCCGGCGCCGGTGCTCTCAGGAAGGTCGTCGTTTCTCCTCGGGTGATTTCAAATCAAGGTGATTCACCCAAAGAACCGAGTGATGATGCTCAGATTACATTGTCAGTTGATGAATCTGCTTATAGCAATGTGGAGACTGCAAAATCTACTCCTGAGGATCCACCGGCTGAACCAGACAACAAGGTCACCAGTCCCAGAGATCAATGCGATGCAAATGGAGTGGATGGCCAAATGACCATTTTCTATTGTGGCAAGGTGAATGTGTATGATGGAGTTCCACCAGATAAGGCATGGGCAATCATGCATCTCGCAGCTAGTCCAATTCATTTCCCTCAGAATCACCCCTTGGGTGGAACTGCTGCATGTCAGTCTCCACCTTGTCTTTTGCAGTCTGCCAACGAGAGAGATGACTTTTTTCCTCCTAGTGCTAATATCTATCGAAATGTGCATACAGAGAAGATGGTTGAGTACCCTCAGCAGCAGCATGTAAAAGGAACGGGTACTCGAGATTCTGATGTTGAGGGTCAGGCGAGTCGGAAAGTTTCATTACAGAGATACCTTGAAAAGCGAAAAGACAGGGGAAGGTTAAAGAACAAGAAAAATACAGGATTGTCTTCTTCTAGCTTGGAGGGGTATATGAACCATCAAATGAGAACGCACATACCCAATAAAGATTTAGGTCAGATTGTGACAAGCTCTTTATCCCCACCTGGAGTTGCAACAGCCTTCGTTGGAACAGCTGACAATCTGCCAAAACTTGCATGTTTTCCTGTCGACCTTAATGTCAAAGATATCCAGGAGTGCTGA 1008 46.43 MSAGTATFRSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKALLEPCDDSGAGALRKVVVSPRVISNQGDSPKEPSDDAQITLSVDESAYSNVETAKSTPEDPPAEPDNKVTSPRDQCDANGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAASPIHFPQNHPLGGTAACQSPPCLLQSANERDDFFPPSANIYRNVHTEKMVEYPQQQHVKGTGTRDSDVEGQASRKVSLQRYLEKRKDRGRLKNKKNTGLSSSSLEGYMNHQMRTHIPNKDLGQIVTSSLSPPGVATAFVGTADNLPKLACFPVDLNVKDIQEC 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2870425 2875261 + Hsped.03g02260.1 Hepe03g0226 565224

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0226 335 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 20 260 IPR040390 GO:0005634(PANTHER)|GO:0009611(PANTHER)|GO:0031347(PANTHER)|GO:2000022(PANTHER)
Hepe03g0226 335 Pfam Jas motif 244 260 IPR018467 -
Hepe03g0226 335 MobiDBLite consensus disorder prediction 103 138 - -
Hepe03g0226 335 ProSiteProfiles Tify domain profile. 138 173 IPR010399 -
Hepe03g0226 335 Pfam tify domain 144 172 IPR010399 -
Hepe03g0226 335 SMART tify_2 138 173 IPR010399 -
Hepe03g0226 335 MobiDBLite consensus disorder prediction 225 278 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0226 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe03g2127 . 1 230 Tify Gene Family AT3G21175 56.9 2.7e-58 222.2
Hepe10g0438 . 47 298 Tify Gene Family AT4G24470 54.1 6.4e-69 258.1
Hepe02g0710 . 89 259 Tify Gene Family AT4G24470 59.0 8.4e-45 177.9
Hepe03g2127 . 73 273 Tify Gene Family AT4G24470 52.0 4.2e-44 175.6
Hepe03g2127 . 1 289 Tify Gene Family AT1G51600 58.2 5.7e-83 304.7
Hepe10g0439 . 71 246 Tify Gene Family AT1G51600 59.0 1.3e-50 197.2
Hepe10g0438 . 41 250 Tify Gene Family AT1G51600 54.2 8.3e-50 194.5
Hepe02g0710 . 86 259 Tify Gene Family AT1G51600 60.3 9.2e-49 191.0
Hepe10g0438 . 47 298 Tify Gene Family AT4G24470 54.1 6.4e-69 258.1
Hepe02g0710 . 89 259 Tify Gene Family AT4G24470 59.0 8.4e-45 177.9
Hepe03g2127 . 73 273 Tify Gene Family AT4G24470 52.0 4.2e-44 175.6
Hepe03g2127 . 1 289 Tify Gene Family AT1G51600 58.2 5.7e-83 304.7
Hepe10g0439 . 71 246 Tify Gene Family AT1G51600 59.0 1.3e-50 197.2
Hepe10g0438 . 41 250 Tify Gene Family AT1G51600 54.2 8.3e-50 194.5
Hepe02g0710 . 86 259 Tify Gene Family AT1G51600 60.3 9.2e-49 191.0
Hepe03g2127 . 1 230 Tify Gene Family AT3G21175 56.9 2.7e-58 222.2
Hepe03g0226 . 1 180 Tify Gene Family AT4G14713 52.1 4.1e-46 181.8
Hepe03g0226 . 1 285 Tify Gene Family AT4G14720 52.0 2.1e-67 253.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003252 2 5 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55204 PF06200 tify 3.00E-15 No_clan Hepe TF