Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0236 ATGTCACAGTCCCTGCAACTTTTCTCCTCCTCCACCCGCTCTCCGGCCATTTCCCTCCCCAAAAACCCCCTCTCAAAACCCTCCCCTTCCACCGCCGCCTTTCGCTTCCCTTTCACCTTCACCAAATCCTCAATTAAAGCCTCTTCCTCCCCGGATCTCAATCCATTGTCATCGTCTTCCACTTCCCAACTCCTGGTTTCTGAAAATGGCTCCAGTTCCGGAGTTGGGGTTGTGTCTTCTTCTGCTTCTATAAGGGAGTTTGTTCCTGTTGTCTCTGATGCCAGCTCGATTGATGTCGATACTGTTACGGAGGCTGAGTTGAAGGAGAATGGCTTCAGGAGCACCAGGAGGACGAAGCTCGTGTGCACTATTGGCCCTGCTACTTGCGGATTTGAGCAGCTTGAGGCGCTCGCTGTTGGCGGTATGAATGTTGCGAGAATCAATATGTGCCATGGGACTCGAGAGTGGCATCGGACGGTCATTGAACGCGTGCGGCGGCTTAATGAGGAGAAGGGCTATGCTGTGGCTATTATGATGGATACTGAAGGGAGTGAAATTCATATGGGGGATTTTGGTGGAGCTTCTTCGGCTAAAGCGGAAGATGGTGAAATCTGGACATTCAGTGTCAGAGCTTTTGATTCAACACTCCCAGAACGCACTATTAATGTGAATTATGAAGGGTTTGCAGAAGATGTAAGAGTGGGTGATGAGCTCCTTGTTGATGGTGGAATGGTGAGGTTTGAGGTAATCGAAAAAATTGGTCCTGATGTTAAGTGCCTGTGTACTGATCCGGGATTGTTGTTGCCACGGGCTAACTTGACCTTTTGGAGGGATGGACATCTAGTAAGAGAACGTAATGCCATGCTCCCTACAGTTTCTTCTAAGGATTGGTTGGATATTGATTTTGGGATTGCTGAAGGTGTTGAATTTCTGGCCATATCATTTGTCAAGTCTGCTGAAGTGATTAAACATCTCAAAAGCTATATTGCTGCACGTTCTCGTGGCAGTGACATTTCCATTATTGCGAAGATAGAGAGTTTGGACTCATTGAAGAACTTGGAAGAAATTATTGTAGCATCAGATGGAGCTATGGTAGCTAGAGGAGATTTAGGAGCTCAAATACCACTGGAACAGGTTCCATCAGTCCAGCAAAAGGTCGTCCAACTATGCAGGCAGTTAAATAAGCCAGTTATTGTTGCTTCTCAGCTGCTTGAGTCGATGATTGAATACCCTACACCCACCAGAGCTGAAGTTGCTGATGTTTCCGAGGCCGTTAGGCAGCGAGCAGATGCTCTAATGCTCTCTGGTGAGTCCGCCATGGGCCAGTTCCCCGATAAGGCATTGACTGTTTTGAGAACTGTCAGTCTAAGAATTGAGAAGTGGTGGAGGGACGAGAAGCGCCATGAAGCTATGGAACTCCCAGAAGTTGGATCTTCATTTTCAGATAGTATCTTAGAAGAGATCTGCAATTCGGCTGCCAAAATGGCCAATAATTTGGAGGTGGATGCGATTTTCGTCTACACAAAGACAGGCCACATGGCATCTCTTCTATCCCGTTGCCGACCCGATTGCCCGATCTTTGCATTTACTTCCACGACGTCTGTGAGGAGACGTCTTAACTTGCAATGGGGCTTGATACCCTTCCGTCTGAGCTTCTCCGACGACATGGAGAACAACCTCAACAAAACATTTTTGCTGCTTAAAGCCAGAAACTTGATCAAATCAGGTGATCTTGTAATTGCTGTCTCAGACATGTTGCAGTCTATCCAAGTAATGAATGTTCCATAA 1788 47.04 MSQSLQLFSSSTRSPAISLPKNPLSKPSPSTAAFRFPFTFTKSSIKASSSPDLNPLSSSSTSQLLVSENGSSSGVGVVSSSASIREFVPVVSDASSIDVDTVTEAELKENGFRSTRRTKLVCTIGPATCGFEQLEALAVGGMNVARINMCHGTREWHRTVIERVRRLNEEKGYAVAIMMDTEGSEIHMGDFGGASSAKAEDGEIWTFSVRAFDSTLPERTINVNYEGFAEDVRVGDELLVDGGMVRFEVIEKIGPDVKCLCTDPGLLLPRANLTFWRDGHLVRERNAMLPTVSSKDWLDIDFGIAEGVEFLAISFVKSAEVIKHLKSYIAARSRGSDISIIAKIESLDSLKNLEEIIVASDGAMVARGDLGAQIPLEQVPSVQQKVVQLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGQFPDKALTVLRTVSLRIEKWWRDEKRHEAMELPEVGSSFSDSILEEICNSAAKMANNLEVDAIFVYTKTGHMASLLSRCRPDCPIFAFTSTTSVRRRLNLQWGLIPFRLSFSDDMENNLNKTFLLLKARNLIKSGDLVIAVSDMLQSIQVMNVP 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2956793 2960691 + Hsped.03g02360.1 Hepe03g0236 565234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0236 595 FunFam Pyruvate kinase 459 585 - -
Hepe03g0236 595 Gene3D - 459 585 IPR036918 -
Hepe03g0236 595 PANTHER PYRUVATE KINASE 88 585 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0004743(PANTHER)|GO:0005737(PANTHER)|GO:0006096(PANTHER)|GO:0006096(InterPro)|GO:0009570(PANTHER)|GO:0030955(InterPro)
Hepe03g0236 595 FunFam Pyruvate kinase 291 458 - -
Hepe03g0236 595 SUPERFAMILY PK beta-barrel domain-like 185 276 IPR011037 -
Hepe03g0236 595 FunFam Pyruvate kinase 184 290 - -
Hepe03g0236 595 Pfam Pyruvate kinase, barrel domain 116 447 IPR015793 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Hepe03g0236 595 Gene3D - 116 458 IPR040442 -
Hepe03g0236 595 Gene3D - 184 290 IPR015806 GO:0004743(InterPro)|GO:0006096(InterPro)
Hepe03g0236 595 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 99 462 IPR015813 GO:0003824(InterPro)
Hepe03g0236 595 NCBIfam pyruvate kinase 116 584 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Hepe03g0236 595 ProSitePatterns Pyruvate kinase active site signature. 338 350 IPR018209 GO:0004743(InterPro)|GO:0006096(InterPro)
Hepe03g0236 595 SUPERFAMILY PK C-terminal domain-like 447 593 IPR036918 -
Hepe03g0236 595 Pfam Pyruvate kinase, alpha/beta domain 486 585 IPR015795 -
Hepe03g0236 595 PRINTS Pyruvate kinase family signature 367 391 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Hepe03g0236 595 PRINTS Pyruvate kinase family signature 340 366 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Hepe03g0236 595 PRINTS Pyruvate kinase family signature 436 452 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Hepe03g0236 595 PRINTS Pyruvate kinase family signature 392 416 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Hepe03g0236 595 PRINTS Pyruvate kinase family signature 173 189 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Hepe03g0236 595 PRINTS Pyruvate kinase family signature 308 322 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Hepe03g0236 595 PRINTS Pyruvate kinase family signature 417 435 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Hepe03g0236 595 MobiDBLite consensus disorder prediction 1 30 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0236 K00873 - - csv:101218017 1041.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0236 Hepe-Chr3:2956793 Hepe07g0392 Hepe-Chr7:3994939 7.20e-195 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g584 Blo01g00106 . . Bda08g00261 . . . Bma05g01085 . . . . . . . . . . . . . . . . Cla06g00619 Cam06g0657 Cec06g0661 Cco06g0667 Clacu06g0644 Cmu06g0638 Cre06g1405 . . . . . Csa02g01116 Chy05g00372 . . . . . Bpe05g00875 . . . Sed09g0729 . . Cma08g01117 Cma17g00198 Car08g01000 Car17g00175 Cpe12g00169 Cpe17g00168 Bhi12g02248 Tan06g2474 Cmetu05g0533 . Hepe03g0236 . Lcy13g0319 . . . . . . . Lsi09g01285 . . Cme05g00500
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006080 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 38