Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0239 ATGGAGCCCGGAGGTCCACCCACCCCTCCGCCGCTCCCGCCGCTTCCCACCGGCGCCATTCTCCTCGGCAAGTACCAGTTAGGCCGATTCCTCGGCCGTGGAAGCTTCGCCAAGGTGTACCAGGCCCGTTCTCTTGTCGATAACTCCATTGTTGCCGTCAAAATCATCGACAAGAACAAAACCATCGACGCCGCCATGGAGCCCTGTATAGTCCGTGAGATCTCCGTGATGCGCCGCCTGCAGCACCATCCGAACATCCTCAGAATCCATGAAGTCATGGCGACGAAATCAAAGATCTACCTCGTCGTCGATTACGCCTCCGGCGGTGAGCTATTTGCGAAACTCCTCCGCCGTGGACGTCTGACGGAATCCACCGCTCGCCGCTACTTTCAACAACTCGTCTCTGCTCTCCATTTCTGTCACCAAAACGGCATCGCTCATCGCGACATCAAGCCTCAAAATCTCCTCCTCGACGAAGACGGTAACCTAAAGGTCTCCGACTTCGGCCTCTCGGCGTTACCAGAGCAGATCAAAGACGGAATGCTCCACACCGCGTGCGGAACTCCAGCCTACACCGCGCCGGAGGTTGTTTCCCGGCGAGGCTACGACGGTGCAAAAGCCGATGCGTGGTCCTGCGGTGTGATTCTCTTCGTTCTACTCTCCGGCCACCTCCCATTCAGCGATAACAACCTCGTGGCGATGTTCAAGAAGGTTTACCGACGGGAGTATCAATTTCCCGATTCGATTTCGAAGCCTGCCAGGCATTTGATCTTCCAATTGCTGGATCCGAATCCGAACACGAGGATGAGCATCGAGGCGTTGATGCAGCATTCGTGGTACAAGAAATCGCTGAGATCGAAGCCGCAAATCAACAACCGGAGCTTGTTCGAATCGTTAGGTAATTACAAATCTGATTTGGGGGTTTGTGGAATGAATGCTTTTGATATAATTTCAATGTCTTCTGGTTTGGATCTGTCGGGGTTGTTTGAGCCGACGGATTGTAAGAAGAGGTTCACGACGGGGGTGAGTATGGAGAAAGTGGAGGAGAGAGTTACAGAGATCGGAGGGGAATTAGGTTACAGAGTGGAGAAAGGGAAAACTGGAGCAATTGGATTGGGGAAAGGGAGGATGATTTTGTTGGTGGAGGTTTTGGAAATCACTGCTAATTTGTTGATGGTGGAAGTGAAGGTAGCTGAATCAAAAATGGAGTTTGAGAGAATGCATTGGGGGGATTTGAAAGCTAAGTTGCAGGACATTGTTGTTTCTTGGCATGCCAATGAGGCAATGTGA 1290 52.09 MEPGGPPTPPPLPPLPTGAILLGKYQLGRFLGRGSFAKVYQARSLVDNSIVAVKIIDKNKTIDAAMEPCIVREISVMRRLQHHPNILRIHEVMATKSKIYLVVDYASGGELFAKLLRRGRLTESTARRYFQQLVSALHFCHQNGIAHRDIKPQNLLLDEDGNLKVSDFGLSALPEQIKDGMLHTACGTPAYTAPEVVSRRGYDGAKADAWSCGVILFVLLSGHLPFSDNNLVAMFKKVYRREYQFPDSISKPARHLIFQLLDPNPNTRMSIEALMQHSWYKKSLRSKPQINNRSLFESLGNYKSDLGVCGMNAFDIISMSSGLDLSGLFEPTDCKKRFTTGVSMEKVEERVTEIGGELGYRVEKGKTGAIGLGKGRMILLVEVLEITANLLMVEVKVAESKMEFERMHWGDLKAKLQDIVVSWHANEAM 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3044734 3046121 + Hsped.03g02390.1 Hepe03g0239 565237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0239 429 Pfam NAF domain 311 364 IPR004041 GO:0007165(InterPro)
Hepe03g0239 429 Pfam Protein kinase domain 25 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe03g0239 429 Gene3D Kinase associated domain 1, KA1 308 422 - -
Hepe03g0239 429 ProSiteProfiles Protein kinase domain profile. 25 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe03g0239 429 SUPERFAMILY Protein kinase-like (PK-like) 21 287 IPR011009 -
Hepe03g0239 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe03g0239 429 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524(InterPro)
Hepe03g0239 429 SMART serkin_6 25 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe03g0239 429 CDD CIPK_C 312 413 - -
Hepe03g0239 429 FunFam Non-specific serine/threonine protein kinase 18 110 - -
Hepe03g0239 429 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165(InterPro)
Hepe03g0239 429 Gene3D Transferase(Phosphotransferase) domain 1 18 307 - -
Hepe03g0239 429 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 20 400 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Hepe03g0239 429 FunFam Non-specific serine/threonine protein kinase 16 304 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0876 Hepe-Chr1:72863903 Hepe03g0239 Hepe-Chr3:3044734 9.85e-25 dispersed
Hepe03g0239 Hepe-Chr3:3044734 Hepe04g0695 Hepe-Chr4:60664754 4.39e-129 dispersed
Hepe03g1916 Hepe-Chr3:76208939 Hepe03g0239 Hepe-Chr3:3044734 3.42e-14 transposed
Hepe09g0409 Hepe-Chr9:3651624 Hepe03g0239 Hepe-Chr3:3044734 1.45e-13 transposed
Hepe03g0239 Hepe-Chr3:3044734 Hepe05g1603 Hepe-Chr5:65735092 4.11e-187 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72637 PF00069 Pkinase 2.90E-73 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0239 K12761 - csv:101215156 787.334