Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe03g0248 | ATGGCTCGGGACGGGCATGTAGTGCCGGTGGATCCACAGGCCGCGCCGATCACTGTAAAGAAGAAGAAACAGTCTTCTCGGAATTGGATTCTACTGGATTGTACAGGCCAAGGCACCGTCCTCGATGTCGACAAGTATGCAATCATGCATCGAGTTCAAATTCATGCTCGAGACCTTCGGATTCTTGATCCTTTGCTTTCTTATCCCTCTACCATTTTGGGCCGTGAGAGGGCCATTGTTCTTAATCTCGAGCATATAAAGGCGATCATTACTGCTGAAGAGGTTTTACTTAGAGATCCAGCAGATGAAAATGTCATCCCTGTGGTTGAGGAGCTTCAGAGGCGATTGCCTCCTTCTAATATATTCCAGCTTCAAATTCAAGGAGATGGGAGAGAGTATCAGGGTGGGCAACAAGATGGTGAAGCGGAAGAGGATGAATCGCCATTCGAATTCCGCGCCCTCGAGGTAGCTTTGGAGGCTGTATGTAGTTTTCTTGCTGCACGGACAACTGAATTGGAGACTGCTGCTTATCCTGCCTTGGATGAGCTTACTGCCAAGATTAGTAGCCGCAACTTGGACAGAGTTCGTAAATTAAAGAGTGCAATGACCAGGTTGACTGCAAGGGTTCAAAAGGTGAGAGATGAGCTTGAACAATTACTGGACGACGACGATGATATGGCAGACCTTTACTTGTCAAGAAAGATGAGTTCATCTTCTCCTGTAAGCGGTTCTGGTCCTGCCAATTGGTTTCCTGCCTCTCCTACCATAGGTTCAAAGATCTCAAGAGCAAGCAGAGCCAGTATTGCGACTGTACGTGGGGATGAGAATGACATCGAGGAGCTTGAAATGTTGCTAGAGGCTTACTTTATGCAGATTGATGGTACATTGAACAAATTAACTACACTGCGAGAATATATCGATGACACAGAAGATTATATCAATATTCAGCTCGACAATCATCGAAATCAACTCATTCAGTTGGAGCTCTTTTTAAGTTCTGGAACTGTTTGTTTGTCTATCTATTCTTTGGTGAGTGCAATATTTGGCATGAACATTCCATACACTTGGAATGACAATCATGGATACATGTTTAAATGGGTTGTCATTGATAGTGGAGTAGCTTGCGCCCTGCTGTTCATCGCAATTGTTTACTATGCTCGCCTCAAAGGTTTGGTGGGGTCTTGA | 1185 | 44.98 | MARDGHVVPVDPQAAPITVKKKKQSSRNWILLDCTGQGTVLDVDKYAIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEHIKAIITAEEVLLRDPADENVIPVVEELQRRLPPSNIFQLQIQGDGREYQGGQQDGEAEEDESPFEFRALEVALEAVCSFLAARTTELETAAYPALDELTAKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMSSSSPVSGSGPANWFPASPTIGSKISRASRASIATVRGDENDIEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVSAIFGMNIPYTWNDNHGYMFKWVVIDSGVACALLFIAIVYYARLKGLVGS | 394 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 3170359 | 3176019 | + | Hsped.03g02480.1 | Hepe03g0248 | 565246 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe03g0248 | 394 | Gene3D | Magnesium transport protein CorA, transmembrane region | 105 | 324 | - | - | |
| Hepe03g0248 | 394 | PANTHER | RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL | 20 | 390 | IPR039204 | GO:0015095(PANTHER)|GO:0015693(PANTHER) | |
| Hepe03g0248 | 394 | Pfam | Magnesium transporter MRS2-like | 274 | 321 | - | - | |
| Hepe03g0248 | 394 | Pfam | Magnesium transporter MRS2-like | 41 | 237 | - | - | |
| Hepe03g0248 | 394 | SUPERFAMILY | Magnesium transport protein CorA, transmembrane region | 330 | 382 | IPR045863 | - | |
| Hepe03g0248 | 394 | Coils | Coil | 195 | 222 | - | - | |
| Hepe03g0248 | 394 | CDD | Mrs2_Mfm1p-like | 29 | 391 | IPR039204 | - | |
| Hepe03g0248 | 394 | FunFam | Magnesium transporter MRS2-1 | 17 | 100 | - | - | |
| Hepe03g0248 | 394 | Gene3D | - | 15 | 100 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe03g0248 | Hepe-Chr3:3170359 | Hepe07g0517 | Hepe-Chr7:5459026 | 2.66e-86 | dispersed | |
| Hepe02g0661 | Hepe-Chr2:7077724 | Hepe03g0248 | Hepe-Chr3:3170359 | 1.64e-91 | transposed | |
| Hepe02g1289 | Hepe-Chr2:16151263 | Hepe03g0248 | Hepe-Chr3:3170359 | 6.98e-105 | transposed | |
| Hepe10g0575 | Hepe-Chr10:6876209 | Hepe03g0248 | Hepe-Chr3:3170359 | 4.11e-79 | transposed | |
| Hepe03g0248 | Hepe-Chr3:3170359 | Hepe06g1965 | Hepe-Chr6:70884018 | 1.21e-145 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe03g0248 | K16075 | - | csv:101203841 | 674.085 |