Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0248 ATGGCTCGGGACGGGCATGTAGTGCCGGTGGATCCACAGGCCGCGCCGATCACTGTAAAGAAGAAGAAACAGTCTTCTCGGAATTGGATTCTACTGGATTGTACAGGCCAAGGCACCGTCCTCGATGTCGACAAGTATGCAATCATGCATCGAGTTCAAATTCATGCTCGAGACCTTCGGATTCTTGATCCTTTGCTTTCTTATCCCTCTACCATTTTGGGCCGTGAGAGGGCCATTGTTCTTAATCTCGAGCATATAAAGGCGATCATTACTGCTGAAGAGGTTTTACTTAGAGATCCAGCAGATGAAAATGTCATCCCTGTGGTTGAGGAGCTTCAGAGGCGATTGCCTCCTTCTAATATATTCCAGCTTCAAATTCAAGGAGATGGGAGAGAGTATCAGGGTGGGCAACAAGATGGTGAAGCGGAAGAGGATGAATCGCCATTCGAATTCCGCGCCCTCGAGGTAGCTTTGGAGGCTGTATGTAGTTTTCTTGCTGCACGGACAACTGAATTGGAGACTGCTGCTTATCCTGCCTTGGATGAGCTTACTGCCAAGATTAGTAGCCGCAACTTGGACAGAGTTCGTAAATTAAAGAGTGCAATGACCAGGTTGACTGCAAGGGTTCAAAAGGTGAGAGATGAGCTTGAACAATTACTGGACGACGACGATGATATGGCAGACCTTTACTTGTCAAGAAAGATGAGTTCATCTTCTCCTGTAAGCGGTTCTGGTCCTGCCAATTGGTTTCCTGCCTCTCCTACCATAGGTTCAAAGATCTCAAGAGCAAGCAGAGCCAGTATTGCGACTGTACGTGGGGATGAGAATGACATCGAGGAGCTTGAAATGTTGCTAGAGGCTTACTTTATGCAGATTGATGGTACATTGAACAAATTAACTACACTGCGAGAATATATCGATGACACAGAAGATTATATCAATATTCAGCTCGACAATCATCGAAATCAACTCATTCAGTTGGAGCTCTTTTTAAGTTCTGGAACTGTTTGTTTGTCTATCTATTCTTTGGTGAGTGCAATATTTGGCATGAACATTCCATACACTTGGAATGACAATCATGGATACATGTTTAAATGGGTTGTCATTGATAGTGGAGTAGCTTGCGCCCTGCTGTTCATCGCAATTGTTTACTATGCTCGCCTCAAAGGTTTGGTGGGGTCTTGA 1185 44.98 MARDGHVVPVDPQAAPITVKKKKQSSRNWILLDCTGQGTVLDVDKYAIMHRVQIHARDLRILDPLLSYPSTILGRERAIVLNLEHIKAIITAEEVLLRDPADENVIPVVEELQRRLPPSNIFQLQIQGDGREYQGGQQDGEAEEDESPFEFRALEVALEAVCSFLAARTTELETAAYPALDELTAKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMSSSSPVSGSGPANWFPASPTIGSKISRASRASIATVRGDENDIEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVSAIFGMNIPYTWNDNHGYMFKWVVIDSGVACALLFIAIVYYARLKGLVGS 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3170359 3176019 + Hsped.03g02480.1 Hepe03g0248 565246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0248 394 Gene3D Magnesium transport protein CorA, transmembrane region 105 324 - -
Hepe03g0248 394 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 20 390 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Hepe03g0248 394 Pfam Magnesium transporter MRS2-like 274 321 - -
Hepe03g0248 394 Pfam Magnesium transporter MRS2-like 41 237 - -
Hepe03g0248 394 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 330 382 IPR045863 -
Hepe03g0248 394 Coils Coil 195 222 - -
Hepe03g0248 394 CDD Mrs2_Mfm1p-like 29 391 IPR039204 -
Hepe03g0248 394 FunFam Magnesium transporter MRS2-1 17 100 - -
Hepe03g0248 394 Gene3D - 15 100 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0248 K16075 - - csv:101203841 674.085
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0248 Hepe-Chr3:3170359 Hepe07g0517 Hepe-Chr7:5459026 2.66e-86 dispersed
Hepe02g0661 Hepe-Chr2:7077724 Hepe03g0248 Hepe-Chr3:3170359 1.64e-91 transposed
Hepe02g1289 Hepe-Chr2:16151263 Hepe03g0248 Hepe-Chr3:3170359 6.98e-105 transposed
Hepe10g0575 Hepe-Chr10:6876209 Hepe03g0248 Hepe-Chr3:3170359 4.11e-79 transposed
Hepe03g0248 Hepe-Chr3:3170359 Hepe06g1965 Hepe-Chr6:70884018 1.21e-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g607 Blo01g00099 . . Bda08g00266 . . . . Cmo08g01086 Cmo17g00183 . . . . . . . . . . . . . . Cla06g00628 Cam06g0667 Cec06g0671 Cco06g0676 Clacu06g0654 Cmu06g0647 Cre06g1415 Cone14ag0131 Cone15ag0138 . . . Csa02g01103 Chy05g00362 . . . . . Bpe05g00868 . . . Sed09g0722 . . Cma08g01112 Cma17g00187 Car08g00995 Car17g00166 Cpe12g00161 Cpe17g00172 Bhi12g02261 Tan06g2463 Cmetu05g0340 . Hepe03g0248 . Lcy13g0329 . . . . . . . Lsi09g01276 . . Cme05g00518
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g1289 . 1 447 MRS2 Gene Family AT1G16010 85.0 5.4e-207 717.2
Hepe10g0575 . 6 380 MRS2 Gene Family AT1G16010 52.4 4.4e-108 388.7
Hepe06g1965 . 29 330 MRS2 Gene Family AT1G16010 50.9 8.9e-77 284.6
Hepe03g0248 . 1 367 MRS2 Gene Family AT5G64560 81.8 5.9e-162 567.4
Hepe06g1965 . 1 331 MRS2 Gene Family AT5G64560 67.5 2.1e-111 399.4
Hepe02g0661 . 21 493 MRS2 Gene Family AT3G19640 62.5 2.0e-146 516.2
Hepe07g0517 . 58 405 MRS2 Gene Family AT3G58970 69.2 2.6e-121 432.6
Hepe10g0575 . 3 380 MRS2 Gene Family AT2G03620 68.1 4.3e-137 485.0
Hepe02g1289 . 13 447 MRS2 Gene Family AT2G03620 53.3 4.3e-113 405.2
Hepe03g0248 . 1 329 MRS2 Gene Family AT5G09690 75.6 1.2e-128 456.4
Hepe06g1965 . 1 330 MRS2 Gene Family AT5G09690 64.3 2.3e-106 382.5
Hepe02g1289 . 40 383 MRS2 Gene Family AT5G09690 50.6 1.5e-78 290.0
Hepe03g0248 . 12 289 MRS2 Gene Family AT5G09720 67.0 5.0e-92 334.7
Hepe06g1965 . 35 293 MRS2 Gene Family AT5G09720 58.6 5.2e-73 271.6
Hepe02g1289 . 1 447 MRS2 Gene Family AT1G80900 83.2 9.9e-201 696.4
Hepe10g0575 . 6 380 MRS2 Gene Family AT1G80900 54.0 1.4e-106 383.6
Hepe06g1965 . 29 330 MRS2 Gene Family AT1G80900 50.5 1.0e-72 271.2
Hepe10g0930 . 104 443 MRS2 Gene Family AT5G22830 83.5 8.2e-158 553.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002609 1 2 1 0 1 1 3 1 1 2 1 1 3 2 2 3 1 5 3 1 2 2 2 2 2 1 2 3 4 3 58