Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0262 ATGGAAAACACCGTCAATGGCGGCGGAAGAGATCATGACGACGACGAAGACGAGCTGAAGATAGGCGGCGTTGTGGTCGGTAACCGCCGATCGAGAGGGCGGCCACCGGGATCCAAAAACAAACCAAAACCCCCAATCATCGTCACGCGCGACAGCCCCCACGCGCTTCGCACGCACGTGATCGAAATCGCCGGAGGAGCTGACGTCGCCGACAGCATAAAGCAATTCTCTCTCCGCCGGCAACGTGGGGTTTGTGTTCTCAGCGGCAGCGGCACGGTCGTCAACGTCAATCTCCGGCAATCAGCCGCTTCCGCCGCCGTGATCCAACTTCAAGGCCGGTTCGAGATTCTGACTCTGACCGGTTCTTTTCTTCCCGGTCGAGACCATCCCGGTTCGACCGGGTTGACTGTGTACCTCGCCGGCGGGCAGGGGCAGGTAGTTGGAGGGACGGTGGTGGGCCCACTGTTGGCGGCTGGGCCTGTAATATTGATAGCTGCTACTTTTGCTAATGCAACTTATGAGAAATTGCCTTTACAAGACGACCAAAATTATGAGAGAGAGACTTCTCCGGCCGCCACGGGCAGCGGAGAAGTGGAGGCGCCACTGCTGTGTCCTCCGACGGCAACTTCAATTTATGAAATGATGACACCTAATAACCATCATGGAATTGGGGGACACATGGGAAGCTATGAATATGCTCTCATGAGAGACCGTCTTGTTTAA 723 56.02 MENTVNGGGRDHDDDEDELKIGGVVVGNRRSRGRPPGSKNKPKPPIIVTRDSPHALRTHVIEIAGGADVADSIKQFSLRRQRGVCVLSGSGTVVNVNLRQSAASAAVIQLQGRFEILTLTGSFLPGRDHPGSTGLTVYLAGGQGQVVGGTVVGPLLAAGPVILIAATFANATYEKLPLQDDQNYERETSPAATGSGEVEAPLLCPPTATSIYEMMTPNNHHGIGGHMGSYEYALMRDRLV 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3441073 3442202 - Hsped.03g02620.1 Hepe03g0262 565260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0262 240 Gene3D - 56 186 - -
Hepe03g0262 240 ProSiteProfiles PPC domain profile profile. 53 191 IPR005175 -
Hepe03g0262 240 MobiDBLite consensus disorder prediction 180 199 - -
Hepe03g0262 240 MobiDBLite consensus disorder prediction 1 48 - -
Hepe03g0262 240 MobiDBLite consensus disorder prediction 1 23 - -
Hepe03g0262 240 CDD DUF296 57 140 IPR005175 -
Hepe03g0262 240 Pfam Plants and Prokaryotes Conserved (PCC) domain 57 169 IPR005175 -
Hepe03g0262 240 SUPERFAMILY AF0104/ALDC/Ptd012-like 55 182 - -
Hepe03g0262 240 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 12 190 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Hepe03g0262 240 FunFam AT-hook motif nuclear-localized protein 56 184 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0262 Hepe-Chr3:3441073 Hepe06g1622 Hepe-Chr6:67068574 1.52e-69 dispersed
Hepe03g0262 Hepe-Chr3:3441073 Hepe05g1629 Hepe-Chr5:66159109 1.21e-81 wgd
Hepe03g0262 Hepe-Chr3:3441073 Hepe08g2445 Hepe-Chr8:65405116 1.79e-62 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0262 - - - 0.0