Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0275 ATGAATTCTTCATTCTATCACTCCCAAAATTCTAATTTCTCACCGGAATCTTCCTTCGGCTCCTTCGAATCGCTCCGATGGGAAGATTTTCAAATCAGCGACAATTCTCTGCCCTTCAACGAGAATGATTCCGGCGAAATGCTCCTCCACAGCTTGATCTCAGAGGCCGCCGTGTACCCGACGGATAATTCTCTCCGGCAGACTCCGATCAAAGACGAGGAGGTCGAATTGCTCGAAGAAGAAGACCCCCACAAGCGAAAATCCTACAGAGGTGTCCGCCGGCGGCCGTGGGGGAAATTCGCGGCGGAGATACGGGACTCGACCCGACATGGGGTTCGGGTTTGGCTCGGGACATTCGACAGCGCCGAGGCAGCCGCTTTGGCTTACGATCAAGCCGCTTTCTCGATGCGGGGTGCCGCCGCCGTTCTCAATTTTCCGGTGGAAAGAGTTCAGGAATCGCTCAAGGAGATGGAAATGATCAACTCCGCCGCAGACGGCGGAGACGGCGACGGCGACGGCGGATCTCCGGTGATGGCTCTTAAGAGAAAACACTCGATGAGGAAGAAATTCACTAGGAGAAAAAGCAAAGAGAGAGATGGAATTGGGAAAATAGAGAATAATGTGGTTGTTTTGGAAGATCTTGGAGCTGATTATTTGGAAGAACTTTTAAAGTCGTCGGAGAATCTCCGACCATGGTGA 699 51.93 MNSSFYHSQNSNFSPESSFGSFESLRWEDFQISDNSLPFNENDSGEMLLHSLISEAAVYPTDNSLRQTPIKDEEVELLEEEDPHKRKSYRGVRRRPWGKFAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGAAAVLNFPVERVQESLKEMEMINSAADGGDGDGDGGSPVMALKRKHSMRKKFTRRKSKERDGIGKIENNVVVLEDLGADYLEELLKSSENLRPW 232
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 3625519 3626705 + Hsped.03g02750.1 Hepe03g0275 565273
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0275 232 ProSiteProfiles AP2/ERF domain profile. 88 146 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g0275 232 MobiDBLite consensus disorder prediction 162 198 - -
Hepe03g0275 232 MobiDBLite consensus disorder prediction 1 20 - -
Hepe03g0275 232 SUPERFAMILY DNA-binding domain 88 148 IPR016177 GO:0003677(InterPro)
Hepe03g0275 232 CDD AP2 87 147 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g0275 232 PANTHER DNA-BINDING DOMAIN 44 187 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Hepe03g0275 232 FunFam Ethylene-responsive transcription factor 2 87 148 - -
Hepe03g0275 232 Gene3D AP2/ERF domain 87 148 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g0275 232 Pfam AP2 domain 88 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g0275 232 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g0275 232 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g0275 232 SMART rav1_2 88 152 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0275 Hepe-Chr3:3625519 Hepe05g1651 Hepe-Chr5:66377485 9.04e-73 dispersed
Hepe03g0273 Hepe-Chr3:3590214 Hepe03g0275 Hepe-Chr3:3625519 3.91e-27 proximal
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55211 PF00847 AP2 1.10E-14 CL0081 Hepe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0275 K14516 - csv:101206564 369.777