Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe03g0275 | ATGAATTCTTCATTCTATCACTCCCAAAATTCTAATTTCTCACCGGAATCTTCCTTCGGCTCCTTCGAATCGCTCCGATGGGAAGATTTTCAAATCAGCGACAATTCTCTGCCCTTCAACGAGAATGATTCCGGCGAAATGCTCCTCCACAGCTTGATCTCAGAGGCCGCCGTGTACCCGACGGATAATTCTCTCCGGCAGACTCCGATCAAAGACGAGGAGGTCGAATTGCTCGAAGAAGAAGACCCCCACAAGCGAAAATCCTACAGAGGTGTCCGCCGGCGGCCGTGGGGGAAATTCGCGGCGGAGATACGGGACTCGACCCGACATGGGGTTCGGGTTTGGCTCGGGACATTCGACAGCGCCGAGGCAGCCGCTTTGGCTTACGATCAAGCCGCTTTCTCGATGCGGGGTGCCGCCGCCGTTCTCAATTTTCCGGTGGAAAGAGTTCAGGAATCGCTCAAGGAGATGGAAATGATCAACTCCGCCGCAGACGGCGGAGACGGCGACGGCGACGGCGGATCTCCGGTGATGGCTCTTAAGAGAAAACACTCGATGAGGAAGAAATTCACTAGGAGAAAAAGCAAAGAGAGAGATGGAATTGGGAAAATAGAGAATAATGTGGTTGTTTTGGAAGATCTTGGAGCTGATTATTTGGAAGAACTTTTAAAGTCGTCGGAGAATCTCCGACCATGGTGA | 699 | 51.93 | MNSSFYHSQNSNFSPESSFGSFESLRWEDFQISDNSLPFNENDSGEMLLHSLISEAAVYPTDNSLRQTPIKDEEVELLEEEDPHKRKSYRGVRRRPWGKFAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGAAAVLNFPVERVQESLKEMEMINSAADGGDGDGDGGSPVMALKRKHSMRKKFTRRKSKERDGIGKIENNVVVLEDLGADYLEELLKSSENLRPW | 232 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 3625519 | 3626705 | + | Hsped.03g02750.1 | Hepe03g0275 | 565273 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe03g0275 | 232 | ProSiteProfiles | AP2/ERF domain profile. | 88 | 146 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe03g0275 | 232 | MobiDBLite | consensus disorder prediction | 162 | 198 | - | - | |
Hepe03g0275 | 232 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Hepe03g0275 | 232 | SUPERFAMILY | DNA-binding domain | 88 | 148 | IPR016177 | GO:0003677(InterPro) | |
Hepe03g0275 | 232 | CDD | AP2 | 87 | 147 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe03g0275 | 232 | PANTHER | DNA-BINDING DOMAIN | 44 | 187 | IPR044808 | GO:0003700(InterPro)|GO:0009873(InterPro) | |
Hepe03g0275 | 232 | FunFam | Ethylene-responsive transcription factor 2 | 87 | 148 | - | - | |
Hepe03g0275 | 232 | Gene3D | AP2/ERF domain | 87 | 148 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe03g0275 | 232 | Pfam | AP2 domain | 88 | 138 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe03g0275 | 232 | PRINTS | Ethylene responsive element binding protein signature | 89 | 100 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe03g0275 | 232 | PRINTS | Ethylene responsive element binding protein signature | 112 | 128 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe03g0275 | 232 | SMART | rav1_2 | 88 | 152 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe03g0275 | Hepe-Chr3:3625519 | Hepe05g1651 | Hepe-Chr5:66377485 | 9.04e-73 | dispersed | |
Hepe03g0273 | Hepe-Chr3:3590214 | Hepe03g0275 | Hepe-Chr3:3625519 | 3.91e-27 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
55211 | PF00847 | AP2 | 1.10E-14 | CL0081 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe03g0275 | K14516 | - | csv:101206564 | 369.777 |