Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0309 ATGGCCGGTGAGGTAGCGGTGGAGGTTGCTGCGGCGGCGGCAACAGAAGTAGCCGATTCCAATCAGCAGTCCCATAAATTGGAGAGAAAATGGACCTTTTGGTTCGATAACCAATCGAGGCCGAAGCAAGGTGCTGCTTGGGGCACCTCTCTGCGCAAGGTCTATACCTTCGACACCGTTGAAGAGTTTTGGTGTTTGTATGATCAGATATTCAAGCCGAGCAAGTTGCCGGCTAATGCAGATTTTCACCTGTTCAAAACTGGAGTTGAGCCGAAATGGGAAGATCCTGAGTGCGCTAATGGAGGAAAATGGTCTGTCACGAGCAGTAGAAAGGCTAACCTCGATACCATGTGGCTGGAAACGTTGATGGCTTTGATTGGGGAACAATTCGAGGAGTCTGATGAGATCTGTGGCGTAGTTGCCAGTGTGCGCCAGAGGCAGGACAAACTTGCATTGTGGACTAAGACAGCAACAAATGAGGCTGCCCAGATGAGCATTGGTAGGAAATGGAAGGAGATCATCGACGTCACCGACAAGATTTCCTTCAGCTTTCATGAGGATTTGAGGAGGGAAAAGTCAGCAAAATCTCGATACAGTGTCTGA 603 49.42 MAGEVAVEVAAAAATEVADSNQQSHKLERKWTFWFDNQSRPKQGAAWGTSLRKVYTFDTVEEFWCLYDQIFKPSKLPANADFHLFKTGVEPKWEDPECANGGKWSVTSSRKANLDTMWLETLMALIGEQFEESDEICGVVASVRQRQDKLALWTKTATNEAAQMSIGRKWKEIIDVTDKISFSFHEDLRREKSAKSRYSV 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4272612 4275193 - Hsped.03g03090.1 Hepe03g0309 565307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0309 200 Gene3D RNA Cap, Translation Initiation Factor Eif4e 15 200 IPR023398 -
Hepe03g0309 200 FunFam Eukaryotic translation initiation factor 4E 16 200 - -
Hepe03g0309 200 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 16 193 IPR001040 GO:0000340(PANTHER)|GO:0003723(InterPro)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0006413(InterPro)|GO:0016281(PANTHER)
Hepe03g0309 200 Pfam Eukaryotic initiation factor 4E 26 182 IPR001040 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Hepe03g0309 200 ProSitePatterns Eukaryotic initiation factor 4E signature. 81 104 IPR019770 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro)
Hepe03g0309 200 SUPERFAMILY eIF4e-like 21 193 IPR023398 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0309 Hepe-Chr3:4272612 Hepe07g1814 Hepe-Chr7:60893308 9.30e-73 dispersed
Hepe03g0309 Hepe-Chr3:4272612 Hepe05g0938 Hepe-Chr5:41181896 1.08e-29 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0309 K03259 - csv:101208495 384.8