Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0333 ATGGCGGCTTCAAATTGCTCACTGACTCTCGCTCAGCTCCTCGGCCCCAATGTCACCAACTCCGGCGCCGCCGCTTCCTTCATCTGCGACCAATTCTCCACCTCCTCCTCCAACTTCTCCGACACCAAATTCGCCGTCGACACTGTCTACCTCCTCTTCTCCGCCTACCTCGTCTTCTCTATGCAGCTCGGATTTGCCATGCTCTGCGCCGGCTCCGTCCGCGCAAAAAATACCATGAACATCATGCTCACCAACGTACTCGACGCCGCCGCCGGCGGCCTATTTTACTACCTTTTCGGCTTCGCCTTCGCCTTCGGCACCCCTTCCAACTCCTTCATCGGCCGCCACTTCTTCGGCCTCAAGTCGGTCCCCTCCACCGCCACCGCCATCGATTACAGCTTCTTCCTCTATCAATGGGCTTTCGCTATCGCCGCCGCCGGCATCACCAGCGGTTCAATTGCCGAGCGGACCCAATTCGTCGCCTATTTGATCTACTCCTCTGTTTTGACCGGTTTTGTTTACCCGGTTGTATCCCACTGGTTCTGGTCTCCAGACGGTTGGGCCAGCCCGTCTCGATCCAATGGCGATCTCTTATTCGGAACCGGAGTCATCGATTTCGCCGGTTCGGGCGTGGTTCACATGGTCGGTGGAATCGCTGGACTTTGGGGTGCTCTAGTAGAAGGCCCAAGAATCGGACGGTTCGACAGAACCGGTCGCTCCGTTGCACTACGAGGGCATAGCGCTTCGTTAGTCGTTCTCGGTACCTTCATGCTTTGGTTCGGTTGGTACGGGTTCAACCCCGGTTCATTCGCGAAAATCCTGGTTCCGTACGGTTCGGGTAATTTCTACGGACAGTGGAGCGCCGTCGGCCGGACCGCCGTGACGACGACACTAGCCGGTTGCACGGCAGCGCTGACGACCCTCTTCGGAAAGAGAATTCTCTCCGGCCACTGGAACGTAACCGACGTCTGCAACGGGTTACTCGGCGGGTTCGCCGCCATAACCTCCGGCTGCTCGGTAGTGGAGCCGTGGGCCGCCGTGATATGTGGGTTTGTGGCAGCGATGGTTCTAATCAGCTGCAACAAACTGGCGGAGAAGGTGAAATACGACGACCCATTGGAGGCGGCGCAATTGCACGGCGGGTGCGGCGCGTGGGGGATAATTTTCACGGCGTTGTTCGCGACAAAGAAGTACGTGAACGAGGTGTACGGCGGAGAGACAGGGCGGCCGCACGGGCTGTTTATGGGCGGCGGAGGGAAGTTACTGGCGGCGCATTTGATACAGATTTTGGTGATCGTTGGATGGGTGAGTGTAACAATGGGGCCGTTGTTTTATGGACTTCATAAATTGAAGCTGTTGAGAATCTCGCCGGAGGATGAGATGGCCGGAATGGATATGACAAGGCACGGTGGATTTGCTTACGTGTACCATGACGAAGATGAATCTCCGGTGAATGGGGTTCAGATGAGAAAGATTGAGCCAACGAAAAACAGTCCATTTGGGAATTAA 1509 56.53 MAASNCSLTLAQLLGPNVTNSGAAASFICDQFSTSSSNFSDTKFAVDTVYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNSFIGRHFFGLKSVPSTATAIDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGFVYPVVSHWFWSPDGWASPSRSNGDLLFGTGVIDFAGSGVVHMVGGIAGLWGALVEGPRIGRFDRTGRSVALRGHSASLVVLGTFMLWFGWYGFNPGSFAKILVPYGSGNFYGQWSAVGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITSGCSVVEPWAAVICGFVAAMVLISCNKLAEKVKYDDPLEAAQLHGGCGAWGIIFTALFATKKYVNEVYGGETGRPHGLFMGGGGKLLAAHLIQILVIVGWVSVTMGPLFYGLHKLKLLRISPEDEMAGMDMTRHGGFAYVYHDEDESPVNGVQMRKIEPTKNSPFGN 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4540992 4542790 - Hsped.03g03330.1 Hepe03g0333 565331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0333 502 ProSitePatterns Ammonium transporters signature. 205 230 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Hepe03g0333 502 Pfam Ammonium Transporter Family 50 474 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Hepe03g0333 502 PANTHER AMMONIUM TRANSPORTER 23 481 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Hepe03g0333 502 Gene3D Ammonium transporter AmtB like domains 26 492 IPR029020 -
Hepe03g0333 502 SUPERFAMILY Ammonium transporter 46 455 - -
Hepe03g0333 502 FunFam Ammonium transporter 28 489 - -
Hepe03g0333 502 NCBIfam ammonium transporter 47 474 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0333 Hepe-Chr3:4540992 Hepe05g1708 Hepe-Chr5:67348384 1.75e-297 dispersed
Hepe08g1959 Hepe-Chr8:53532006 Hepe03g0333 Hepe-Chr3:4540992 3.57e-258 transposed
Hepe03g0333 Hepe-Chr3:4540992 Hepe06g1884 Hepe-Chr6:70050425 3.50e-249 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0333 K03320 - csv:101212168 925.235