Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe03g0340 | ATGGCGGCACTTAGTAAATGGCCTTCTCTGTCTCTGTTCTCCCTCGCAATAGTGTTCTTCGTAACAATCGCTCTGGTTCGCAAAGAAGCGACCTCTGAAATCAGGACTGTGTTAGCAAGAGAATTTCAGAGCTCTAGCAACTCATCAATGGCGATTAGGGTGGAGAATGATGATGTGGAGGAACTTAACAATGAGCATGCTGTGGATAATCCTGAGGAAATTGCTGCCTCTGTTGAGATGAGCATCCGTAACAGCACTGAGAGGCGGAAGTTGGGATACTTCTCCTGTGGAACTGGCAACCCCATTGATGACTGCTGGCGTTGCGACTCCAATTGGCACCGCAACCGTAAGCGCCTTGCCGAATGTGGCATCGGGTTTGGTCGGAATGCTATTGGTGGTCGTGACGGTCGTTTCTACGTCGTCACTGATTCGAGCGACAACGATCCGGTGAACCCAAAGCCGGGGACGCTTCGTCATGCCGTCATTCAAGAGAAACCTCTTTGGATTGTGTTCAAAAGGGACATGGTGATTCAATTGAAACAAGAACTCATCATGAACAGTTTCAAGACCATTGATGCTAGGGGTGTCAATGTACACATTGCCAATGGCGCTTGCATCACAGTCCAATTTGTGACTAACATCATTATCCATGGTCTTCACATCCATGATTGCAAGCCGACAGGTAATGCAATGGTGAGAAGCTCTCCAACTCATTTTGGATGGAGAACAATGGCTGATGGAGATGCCATTTCCATCTTTGGGTCAAGCCATATTTGGATTGACCACAATTCACTCTCTAATTGTGCTGATGGACTTGTTGATGCTGTCATGGGCTCAACTGCAATCACAATCTCCAACAATCACTTCACTCACCACAATGAGGTGATGCTTCTAGGCCATAGTGATTCCTACACAAAGGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGAGAGGGTCTCATTCAAAGAATGCCAAGATGTAGGCATGGATATTTCCATGTGGTGAACAATGACTACACTCACTGGGAAATGTATGCCATTGGTGGGAGTGCAAACCCCACCATCAATAGTCAAGGCAACAGATATGCTGCTCCAACCAACCCTTTTGCCAAAGAGGTGACTAAGCGAGTCGAGACAGCGGAGAGGGAATGGAAGGGATGGAATTGGAGATCAGAAGGAGATATGTTGTTGAATGGAGCTTATTTCACCCCATCAGGTGCTGGAGCTTCAGCAAGCTATGCCAGAGCATCAAGCTTAGGAGCTAAATCTGCTTCCATGGTTGGCTCCATCACTTCTTCGGCAGGTTCGCTCCCTTGTCGTCGAGGCCATCCATGCTAG | 1347 | 47.44 | MAALSKWPSLSLFSLAIVFFVTIALVRKEATSEIRTVLAREFQSSSNSSMAIRVENDDVEELNNEHAVDNPEEIAASVEMSIRNSTERRKLGYFSCGTGNPIDDCWRCDSNWHRNRKRLAECGIGFGRNAIGGRDGRFYVVTDSSDNDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITVQFVTNIIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAEREWKGWNWRSEGDMLLNGAYFTPSGAGASASYARASSLGAKSASMVGSITSSAGSLPCRRGHPC | 448 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 4785313 | 4788715 | - | Hsped.03g03400.1 | Hepe03g0340 | 565338 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe03g0340 | 448 | PRINTS | Pollen allergen Amb family signature | 122 | 139 | IPR018082 | - | |
Hepe03g0340 | 448 | PRINTS | Pollen allergen Amb family signature | 348 | 367 | IPR018082 | - | |
Hepe03g0340 | 448 | PRINTS | Pollen allergen Amb family signature | 146 | 171 | IPR018082 | - | |
Hepe03g0340 | 448 | PRINTS | Pollen allergen Amb family signature | 390 | 414 | IPR018082 | - | |
Hepe03g0340 | 448 | PRINTS | Pollen allergen Amb family signature | 419 | 442 | IPR018082 | - | |
Hepe03g0340 | 448 | PRINTS | Pollen allergen Amb family signature | 182 | 198 | IPR018082 | - | |
Hepe03g0340 | 448 | PRINTS | Pollen allergen Amb family signature | 326 | 345 | IPR018082 | - | |
Hepe03g0340 | 448 | PRINTS | Pollen allergen Amb family signature | 246 | 267 | IPR018082 | - | |
Hepe03g0340 | 448 | SMART | amb_all | 174 | 371 | IPR002022 | - | |
Hepe03g0340 | 448 | Gene3D | - | 99 | 441 | IPR012334 | - | |
Hepe03g0340 | 448 | PANTHER | PECTATE LYASE 18-RELATED | 17 | 445 | IPR045032 | GO:0030570(InterPro) | |
Hepe03g0340 | 448 | FunFam | Pectate lyase | 99 | 441 | - | - | |
Hepe03g0340 | 448 | Pfam | Pectate lyase | 186 | 363 | IPR002022 | - | |
Hepe03g0340 | 448 | SUPERFAMILY | Pectin lyase-like | 76 | 442 | IPR011050 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe03g0340 | Hepe-Chr3:4785313 | Hepe10g0060 | Hepe-Chr10:582201 | 6.22e-217 | dispersed | |
Hepe03g0340 | Hepe-Chr3:4785313 | Hepe05g1732 | Hepe-Chr5:67554278 | 4.66e-275 | wgd | |
Hepe03g0340 | Hepe-Chr3:4785313 | Hepe06g1869 | Hepe-Chr6:69767915 | 2.27e-256 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe03g0340 | K01728 | - | csv:101217580 | 867.07 |