Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0340 ATGGCGGCACTTAGTAAATGGCCTTCTCTGTCTCTGTTCTCCCTCGCAATAGTGTTCTTCGTAACAATCGCTCTGGTTCGCAAAGAAGCGACCTCTGAAATCAGGACTGTGTTAGCAAGAGAATTTCAGAGCTCTAGCAACTCATCAATGGCGATTAGGGTGGAGAATGATGATGTGGAGGAACTTAACAATGAGCATGCTGTGGATAATCCTGAGGAAATTGCTGCCTCTGTTGAGATGAGCATCCGTAACAGCACTGAGAGGCGGAAGTTGGGATACTTCTCCTGTGGAACTGGCAACCCCATTGATGACTGCTGGCGTTGCGACTCCAATTGGCACCGCAACCGTAAGCGCCTTGCCGAATGTGGCATCGGGTTTGGTCGGAATGCTATTGGTGGTCGTGACGGTCGTTTCTACGTCGTCACTGATTCGAGCGACAACGATCCGGTGAACCCAAAGCCGGGGACGCTTCGTCATGCCGTCATTCAAGAGAAACCTCTTTGGATTGTGTTCAAAAGGGACATGGTGATTCAATTGAAACAAGAACTCATCATGAACAGTTTCAAGACCATTGATGCTAGGGGTGTCAATGTACACATTGCCAATGGCGCTTGCATCACAGTCCAATTTGTGACTAACATCATTATCCATGGTCTTCACATCCATGATTGCAAGCCGACAGGTAATGCAATGGTGAGAAGCTCTCCAACTCATTTTGGATGGAGAACAATGGCTGATGGAGATGCCATTTCCATCTTTGGGTCAAGCCATATTTGGATTGACCACAATTCACTCTCTAATTGTGCTGATGGACTTGTTGATGCTGTCATGGGCTCAACTGCAATCACAATCTCCAACAATCACTTCACTCACCACAATGAGGTGATGCTTCTAGGCCATAGTGATTCCTACACAAAGGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGAGAGGGTCTCATTCAAAGAATGCCAAGATGTAGGCATGGATATTTCCATGTGGTGAACAATGACTACACTCACTGGGAAATGTATGCCATTGGTGGGAGTGCAAACCCCACCATCAATAGTCAAGGCAACAGATATGCTGCTCCAACCAACCCTTTTGCCAAAGAGGTGACTAAGCGAGTCGAGACAGCGGAGAGGGAATGGAAGGGATGGAATTGGAGATCAGAAGGAGATATGTTGTTGAATGGAGCTTATTTCACCCCATCAGGTGCTGGAGCTTCAGCAAGCTATGCCAGAGCATCAAGCTTAGGAGCTAAATCTGCTTCCATGGTTGGCTCCATCACTTCTTCGGCAGGTTCGCTCCCTTGTCGTCGAGGCCATCCATGCTAG 1347 47.44 MAALSKWPSLSLFSLAIVFFVTIALVRKEATSEIRTVLAREFQSSSNSSMAIRVENDDVEELNNEHAVDNPEEIAASVEMSIRNSTERRKLGYFSCGTGNPIDDCWRCDSNWHRNRKRLAECGIGFGRNAIGGRDGRFYVVTDSSDNDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITVQFVTNIIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAEREWKGWNWRSEGDMLLNGAYFTPSGAGASASYARASSLGAKSASMVGSITSSAGSLPCRRGHPC 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4785313 4788715 - Hsped.03g03400.1 Hepe03g0340 565338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0340 448 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
Hepe03g0340 448 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Hepe03g0340 448 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Hepe03g0340 448 PRINTS Pollen allergen Amb family signature 390 414 IPR018082 -
Hepe03g0340 448 PRINTS Pollen allergen Amb family signature 419 442 IPR018082 -
Hepe03g0340 448 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Hepe03g0340 448 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Hepe03g0340 448 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
Hepe03g0340 448 SMART amb_all 174 371 IPR002022 -
Hepe03g0340 448 Gene3D - 99 441 IPR012334 -
Hepe03g0340 448 PANTHER PECTATE LYASE 18-RELATED 17 445 IPR045032 GO:0030570(InterPro)
Hepe03g0340 448 FunFam Pectate lyase 99 441 - -
Hepe03g0340 448 Pfam Pectate lyase 186 363 IPR002022 -
Hepe03g0340 448 SUPERFAMILY Pectin lyase-like 76 442 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0340 Hepe-Chr3:4785313 Hepe10g0060 Hepe-Chr10:582201 6.22e-217 dispersed
Hepe03g0340 Hepe-Chr3:4785313 Hepe05g1732 Hepe-Chr5:67554278 4.66e-275 wgd
Hepe03g0340 Hepe-Chr3:4785313 Hepe06g1869 Hepe-Chr6:69767915 2.27e-256 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0340 K01728 - csv:101217580 867.07