Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0344 ATGGACGCAGCAGCACCACAACTCGTCTCTTGCGGAATCGACACCATTCGCCTCCGGACATTACCATCGCGCCTTCCGTTTCTGAAACCAATCGCCAGAACTCGCAGGCGCGCCGGTAAGGTTCTTGCGGTTGCGACTGAGCCGAAACCGACGCGGTCCGAGTCCTCCAGTTCGTCTACAAAGAAGTCCGTCAATGGATCAGCAAGGTCTCCGCCGGCTCCTAAACCTGTCAACGGAGTTTCCACTAGAATTGGAGATGTTTCAAAGGAGATTAAAAGAGTCAGAGCCCAGATGGAGGAAAATGAAGAGTTGGCAATCCTCATGAGAGGACTACGGGGACAAAATTTAAAAGATTCCCTTTTTGCAGAGGATAATGTTGAGCTCCGTCTTGTTGAGGTAGATGAGAGCAGTGAGTTTTTGCCTTTGGCTTATGATCCTGCAAGCATATCAGCATATTGGGGGAAAAGACCACGTGCCGTAGCAACTCGAATCGTTCAGTTGCTTTCTGTTGGTGGAGGCTTTCTCTCACATATTGCCTGGGATATCATAAACAAGAAAATTAAGGAGAATGAAGTTGAAAGAGCCATCGAATTAAGGGAAATTGTAACCTCATTGGGTCCAGCATATATTAAGCTAGGACAAGCTCTGAGCATTCGACCAGATATACTGTCACCCGTTGCAATGACTGAGCTGCAAAAGCTTTGTGATAAGGTTCCTTCATTTCCCGATGATGTTGCTATGGCTCTCCTTGAAGAGGAACTTGGTCAACCATGGCAGAACATCTATTCTGAACTTTCTCCTTCCCCAATTGCTGCTGCTTCCTTAGGACAGGTATATAAGGGTCGTTTAAAAGAAAACGGAGATCTGGTTGCTGTTAAAGTTCAGAGGCCTTTCGTTCTAGAGACTGTAACTATTGATTTGTTTATCATACGGAATTTGGGCTTGGTTCTTCGGAGGTTTCCTCAGATCTCTATAGATGTGGTTGGCTTGGTAGATGAATGGGCGGCTCGCTTTTTTGAGGAGCTAGATTACGTGAATGAGGGTGAAAATGGAACACTCTTTGCTGAGATGATGAGAAAGGATCTTCCACAGGTGGTTGTTCCAAAAACATACCAAAAATATACTTCAAGGAAAGTTCTCACTACAGGATGGATAGACGGCGAGAAGCTGTCCCAAAGCACGGAAAGTGATGTCGGGGAACTTGTGAATGTGGGAGTCATATGCTACCTAAAGCAGTTACTTGACACTGGATTCTTCCATGCTGATCCTCATCCTGGGAATTTGATCCGCACTCCAGATGGAAAGTTGGCCATACTTGACTTCGGTTTAGTCACAAAGTTAACTGATGATCAGAAGTATGGAATGATTGAAGCAATTGCACATCTCATTCATCGAGATTATTCGGCTATAGTCAAAGACTTTGTTAAGCTTGGCTTTATCTCAGAGGGTGTTAATTTGGAACCAATCTTGCCAGTCCTAGCAAAGGTTTTCGATCAGGCTCTTGAAGGTGGAGGTGCAAAAAATTTCAACTTCCAGGAGCTGGCTTCAGATTTAGCTCAGATAACATTTGATTATCCATTTCGGATACCTCCATATTTTGCTCTTATAATTAGGGCAATTGGGGTTCTAGAAGGAATAGCTTTAGTGGGAAACCCTGATTTTGCTCTTGTCGACGAGGCATATCCTTATATTGCACAGAGACTTCTGACTGATGAGTCCCCGAGGTTAAGGAGCGCTTTAAGATACACAATCTATGGGAAGTCCGGAGTATTTGATGCTGAGAGATTCATCGATGTTATGCAAGCCTTCGAGAATTTCATAACTGCTGCTAAAAGTGGGGGTGGAGAGGATCTCAATGGAGATATGGCTGATCTTGGTGGTATGAAAAGCCAAACAGCATCTGCCTTTCCTCAATTTCTTCCTGCTCCCCGTCAATTCCAGCAAAAGCAACCAATTGAAACAAGGGCGTCCTTAGCCTTTCTGCTGTCTGATAGAGGGAACTTCTTTCGAGAATTTCTTCTCGACGAGATTGTGAAAGGCATTGATGCAGTCACAAGGGAGCAGTTAGTAAGTTTAATGTCAATCTTTGGAGTTAGAAATGTTATACCAGTTTTTAATATGGTTCCTTCCATTGGACCATTCAAGCCCGTCGCATTTCTACCCACAATAACAGAAGAAGACAGAGTCATACTTAATAATGTTCAAAAGATTCTCGAGTTCTTAACGGCAGGAAGTTCGATCTCAACAACATCTAAAGAGGGTGTCGATGTTGTTCGAGTTATTCAAGAGCTTCTTCCAGTTTTGCCAGGCATCTCTGCTACAGTTCTTCCTGAGGTGCTCAGTCGATTATCTTCCCGGGTATTCGCCCGGTTAATTCGTGATACAATGCTATGA 2394 44.15 MDAAAPQLVSCGIDTIRLRTLPSRLPFLKPIARTRRRAGKVLAVATEPKPTRSESSSSSTKKSVNGSARSPPAPKPVNGVSTRIGDVSKEIKRVRAQMEENEELAILMRGLRGQNLKDSLFAEDNVELRLVEVDESSEFLPLAYDPASISAYWGKRPRAVATRIVQLLSVGGGFLSHIAWDIINKKIKENEVERAIELREIVTSLGPAYIKLGQALSIRPDILSPVAMTELQKLCDKVPSFPDDVAMALLEEELGQPWQNIYSELSPSPIAAASLGQVYKGRLKENGDLVAVKVQRPFVLETVTIDLFIIRNLGLVLRRFPQISIDVVGLVDEWAARFFEELDYVNEGENGTLFAEMMRKDLPQVVVPKTYQKYTSRKVLTTGWIDGEKLSQSTESDVGELVNVGVICYLKQLLDTGFFHADPHPGNLIRTPDGKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYSAIVKDFVKLGFISEGVNLEPILPVLAKVFDQALEGGGAKNFNFQELASDLAQITFDYPFRIPPYFALIIRAIGVLEGIALVGNPDFALVDEAYPYIAQRLLTDESPRLRSALRYTIYGKSGVFDAERFIDVMQAFENFITAAKSGGGEDLNGDMADLGGMKSQTASAFPQFLPAPRQFQQKQPIETRASLAFLLSDRGNFFREFLLDEIVKGIDAVTREQLVSLMSIFGVRNVIPVFNMVPSIGPFKPVAFLPTITEEDRVILNNVQKILEFLTAGSSISTTSKEGVDVVRVIQELLPVLPGISATVLPEVLSRLSSRVFARLIRDTML 797
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4882014 4892022 - Hsped.03g03440.1 Hepe03g0344 565342

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0344 797 Coils Coil 84 104 - -
Hepe03g0344 797 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 57 786 IPR050154 GO:0009507(PANTHER)
Hepe03g0344 797 CDD ABC1_ADCK3-like 233 474 - -
Hepe03g0344 797 ProSiteProfiles Protein kinase domain profile. 264 597 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe03g0344 797 Gene3D Phosphorylase Kinase; domain 1 269 357 - -
Hepe03g0344 797 MobiDBLite consensus disorder prediction 49 67 - -
Hepe03g0344 797 SUPERFAMILY Protein kinase-like (PK-like) 236 469 IPR011009 -
Hepe03g0344 797 Gene3D Transferase(Phosphotransferase) domain 1 358 452 - -
Hepe03g0344 797 MobiDBLite consensus disorder prediction 39 82 - -
Hepe03g0344 797 Pfam ABC1 atypical kinase-like domain 233 472 IPR004147 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0344 K08869 - - csv:101212546 1442.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1016 Hepe-Chr1:74798576 Hepe03g0344 Hepe-Chr3:4882014 1.24e-83 dispersed
Hepe03g0344 Hepe-Chr3:4882014 Hepe09g1854 Hepe-Chr9:58972052 9.38e-123 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g879 . Blo12g00123 Bda03g01118 . Bpe04g01062 . . . Cmo08g01004 . . . . . . . . . . . . . . . Cla06g00742 Cam06g0795 Cec06g0800 . Clacu06g0794 Cmu06g0767 Cre06g1548 . . . . . . Chy05g00545 . . . . . . . . . Sed09g0191 . . Cma08g01034 . . . . Cpe17g00245 Bhi12g01511 Tan06g2320 Cmetu05g0760 Lac12g2067 Hepe03g0344 . Lcy13g0450 . . . . . . . Lsi09g01157 . . Cme05g00693
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009075 1 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 4 1 1 34