Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0349 ATGGGTAGCGACGGAAAGGTCTTTACATTGGCTGAAGTCTCTCAGCACAACACCCCCAAGGACTGTTGGTTGATCATCAATGGAAAGGTTTATAATGTAACCGAGTTCTTGGACGACCATCCCGGTGGCGACGAGGTTTTGTTGTCGGGCACAGGTAAGGATGCAACTGATGATTTTGAAGATGTTGGTCATAGTGAGAGTGCAAGAGAAATGATGAACAAATACTACGTCGGAGAGATCGACATCTCGACGATCCCAGAAAGGTTGACATACACAGCTCCAAAGCAGCCTCACTACAATCAGGATAAGACGACCGAGTTCATCGTCAAGCTCCTCCAGTTCCTGGTTCCTCTCGCACTCTTGGGTTTGGCAGTCGGTATCCGCACCGCTTTTATAGCAAATCAACCTGAGGTTATTGTTGAGATATTAGATGGTTGA 438 47.03 MGSDGKVFTLAEVSQHNTPKDCWLIINGKVYNVTEFLDDHPGGDEVLLSGTGKDATDDFEDVGHSESAREMMNKYYVGEIDISTIPERLTYTAPKQPHYNQDKTTEFIVKLLQFLVPLALLGLAVGIRTAFIANQPEVIVEILDG 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5042167 5045110 - Hsped.03g03490.1 Hepe03g0349 565347

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0349 145 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Hepe03g0349 145 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Hepe03g0349 145 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Hepe03g0349 145 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Hepe03g0349 145 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 80 IPR001199 -
Hepe03g0349 145 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Hepe03g0349 145 SMART Cyt_b5_2 8 81 IPR001199 -
Hepe03g0349 145 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Hepe03g0349 145 PANTHER CYTOCHROME B5 5 118 IPR050668 GO:0005783(PANTHER)|GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Hepe03g0349 145 Gene3D - 2 85 IPR036400 -
Hepe03g0349 145 FunFam Cytochrome b5 type B 2 85 - -
Hepe03g0349 145 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 6 87 IPR036400 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0349 K23490 - - csv:101213506 238.039
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0349 Hepe-Chr3:5042167 Hepe06g0817 Hepe-Chr6:54970997 3.06e-58 dispersed
Hepe10g0572 Hepe-Chr10:6854369 Hepe03g0349 Hepe-Chr3:5042167 6.87e-35 transposed
Hepe03g0349 Hepe-Chr3:5042167 Hepe05g1755 Hepe-Chr5:67866386 2.34e-74 wgd
Hepe03g0349 Hepe-Chr3:5042167 Hepe06g1849 Hepe-Chr6:69606242 3.86e-59 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe06g0817 . 1 132 NADPH P450 reductases AT5G53560 77.6 4.1e-57 217.6
Hepe05g1755 . 1 133 NADPH P450 reductases AT5G53560 69.2 4.0e-52 201.1
Hepe03g0349 . 1 128 NADPH P450 reductases AT5G53560 69.5 2.4e-49 191.8
Hepe06g1849 . 4 131 NADPH P450 reductases AT5G53560 64.8 1.9e-46 182.2
Hepe05g1755 . 1 132 NADPH P450 reductases AT5G48810 64.9 8.1e-48 186.8
Hepe03g0349 . 1 128 NADPH P450 reductases AT5G48810 63.8 9.9e-46 179.9
Hepe06g1849 . 2 132 NADPH P450 reductases AT5G48810 62.4 2.2e-45 178.7
Hepe06g0817 . 1 132 NADPH P450 reductases AT5G48810 58.1 2.4e-44 175.3
Hepe05g1755 . 22 133 NADPH P450 reductases AT2G32720 83.9 1.7e-50 195.7
Hepe03g0349 . 22 128 NADPH P450 reductases AT2G32720 79.4 2.1e-45 178.7
Hepe06g1849 . 21 132 NADPH P450 reductases AT2G32720 71.4 1.1e-41 166.4
Hepe06g0817 . 22 131 NADPH P450 reductases AT2G32720 67.0 1.5e-38 156.0
Hepe10g0572 . 1 131 NADPH P450 reductases AT1G26340 57.0 1.1e-38 156.4
Hepe04g0560 . 2 281 NADPH P450 reductases AT5G17770 81.8 6.8e-131 463.8
Hepe05g0611 . 8 286 NADPH P450 reductases AT5G17770 77.8 2.3e-126 448.7
Hepe06g0817 . 1 132 NADPH P450 reductases AT5G53560 77.6 4.1e-57 217.6
Hepe05g1755 . 1 133 NADPH P450 reductases AT5G53560 69.2 4.0e-52 201.1
Hepe03g0349 . 1 128 NADPH P450 reductases AT5G53560 69.5 2.4e-49 191.8
Hepe06g1849 . 4 131 NADPH P450 reductases AT5G53560 64.8 1.9e-46 182.2
Hepe05g1755 . 1 132 NADPH P450 reductases AT5G48810 64.9 8.1e-48 186.8
Hepe03g0349 . 1 128 NADPH P450 reductases AT5G48810 63.8 9.9e-46 179.9
Hepe06g1849 . 2 132 NADPH P450 reductases AT5G48810 62.4 2.2e-45 178.7
Hepe06g0817 . 1 132 NADPH P450 reductases AT5G48810 58.1 2.4e-44 175.3
Hepe05g1755 . 22 133 NADPH P450 reductases AT2G32720 83.9 1.7e-50 195.7
Hepe03g0349 . 22 128 NADPH P450 reductases AT2G32720 79.4 2.1e-45 178.7
Hepe06g1849 . 21 132 NADPH P450 reductases AT2G32720 71.4 1.1e-41 166.4
Hepe06g0817 . 22 131 NADPH P450 reductases AT2G32720 67.0 1.5e-38 156.0
Hepe10g0572 . 1 131 NADPH P450 reductases AT1G26340 57.0 1.1e-38 156.4
Hepe04g0560 . 2 281 NADPH P450 reductases AT5G17770 81.8 6.8e-131 463.8
Hepe05g0611 . 8 286 NADPH P450 reductases AT5G17770 77.8 2.3e-126 448.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156