Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0349 ATGGGTAGCGACGGAAAGGTCTTTACATTGGCTGAAGTCTCTCAGCACAACACCCCCAAGGACTGTTGGTTGATCATCAATGGAAAGGTTTATAATGTAACCGAGTTCTTGGACGACCATCCCGGTGGCGACGAGGTTTTGTTGTCGGGCACAGGTAAGGATGCAACTGATGATTTTGAAGATGTTGGTCATAGTGAGAGTGCAAGAGAAATGATGAACAAATACTACGTCGGAGAGATCGACATCTCGACGATCCCAGAAAGGTTGACATACACAGCTCCAAAGCAGCCTCACTACAATCAGGATAAGACGACCGAGTTCATCGTCAAGCTCCTCCAGTTCCTGGTTCCTCTCGCACTCTTGGGTTTGGCAGTCGGTATCCGCACCGCTTTTATAGCAAATCAACCTGAGGTTATTGTTGAGATATTAGATGGTTGA 438 47.03 MGSDGKVFTLAEVSQHNTPKDCWLIINGKVYNVTEFLDDHPGGDEVLLSGTGKDATDDFEDVGHSESAREMMNKYYVGEIDISTIPERLTYTAPKQPHYNQDKTTEFIVKLLQFLVPLALLGLAVGIRTAFIANQPEVIVEILDG 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5042167 5045110 - Hsped.03g03490.1 Hepe03g0349 565347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0349 145 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Hepe03g0349 145 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Hepe03g0349 145 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Hepe03g0349 145 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Hepe03g0349 145 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 80 IPR001199 -
Hepe03g0349 145 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Hepe03g0349 145 SMART Cyt_b5_2 8 81 IPR001199 -
Hepe03g0349 145 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Hepe03g0349 145 PANTHER CYTOCHROME B5 5 118 IPR050668 GO:0005783(PANTHER)|GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Hepe03g0349 145 Gene3D - 2 85 IPR036400 -
Hepe03g0349 145 FunFam Cytochrome b5 type B 2 85 - -
Hepe03g0349 145 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 6 87 IPR036400 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0349 Hepe-Chr3:5042167 Hepe06g0817 Hepe-Chr6:54970997 3.06e-58 dispersed
Hepe10g0572 Hepe-Chr10:6854369 Hepe03g0349 Hepe-Chr3:5042167 6.87e-35 transposed
Hepe03g0349 Hepe-Chr3:5042167 Hepe05g1755 Hepe-Chr5:67866386 2.34e-74 wgd
Hepe03g0349 Hepe-Chr3:5042167 Hepe06g1849 Hepe-Chr6:69606242 3.86e-59 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0349 K23490 - csv:101213506 238.039