Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0356 ATGGCTGTGACAGCTTTGTTGTACCATTTGCCTTTTTGGGTCTTTGAATCTTTACCTTATTACTGGGAGTTATTTCATTTGTTCAGACCCTTTCGGATTGCTTATGACCTCGGCTACATCAACTTCTTGGATGTAAGCTACCACTTAAGCAAAGTTCATCAGTTGATGGTAGAAGAGGAAAGAACAGAGGCAGGCTTGGGTAGCGGGAAGGAGTTGACCATGGCATCGTCTTCTTTCAGTGGCGGGAAGCAACTGGCAGTGATTGAAGCTTCTTCTAACTGTGTTCCATACCCACCACCGCAAACAACGTATGAGGAAATTGTAGTCAATCCCAAGATCTGTATGGCATCCTTGGAAAAGCTCCATTCTATCATGGGAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGGCTTTTCGTGGAGGTCACTTCTCGTGGTGGCATTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTCAACTTTCCTTCTACGGCGACCAATGCATCTTTTGTGCTGAGGAAGTATTATCTTTCACTGCTTCATCATTTTGAACAGATTTACTTCTTTAAAGCTGTGGGATGGACACCAGTAATTTCTGATTCCTCTTCATGCCCGAGTGCAGCGACAATTCCTATGCAAGGGATGGCCTCTATGTTGCCGCCATCAGATAATCAGACAACGTTCCAGCAGGCACGGGCTACTGCAACCGGACTTCCAGCAGGTGCTTCGAGTTCGGCATCACCAGCAGGAGGGTTTCCGGTGATCGGAGTCATTGACGGAAAATTTGATAGTGGGTATCTCGTTACTGTTACTGTAGGAACGGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTCCAGAGCAACCTGCTCAACAACAAGTGTTGCAGCCTGGTGCTGTTTTTGCCAAAGATGGTGCTACCTCCACTGCACCAAATGCTCAACGCCGTCGCCGTCGGAAGAAATCGGAGATAAAGCGAAGGGATCCTGCTCATCCAAAGCCGAACAGAAGTGGGTACAACTTCTTCTTTGCTGAGCAGCATGCTAGACTCAAACCATTATACCCAGGGAAGGACAGGGAGATAAGCAGAATGATTGGTGAGCTTTGGAATAAACTTAAAGAGTCTGAAAGAACAGTTTATCAGGAGAAAGCTATGCAAGATAAAGAAAGATACAGAATCGAGATGGAGGATTACAGAGAGAAGCTGAGGACAGGTCAAGTCATCAGTGATGCAGTGCCATTACAACAACGCCTTCCTGAGCCAGACCTGAATATGGTTTATGTTGACAAAACCGAAGAAACCGAGGGTGGCGGCTCTCAAACTCCGGATCATGATACTAGCTATGTCGAAGGCGACTCTGGAGAGTATAAAACGGAAGAGAAGGAGGAAGAAGAGGAAGAGGATGATTCAGAAGAAGCATCTCCACAAGTTGGAATTGGCAATGTGGATGTTAACATTATGGTTGAGGAGGAACACTGCGAGACGAGGCCTGCCGAGCACTGCGATATGAGACCTGTTGAACACTGCGATATGAGACCTGCCGAGCACTGCGATATGAGACCTGCCGAGCACTGCGATATGAGACCTGCCGAACACTGCGATATGAGACCTGCCGAACAGTGCGATATGAGACCTGTTGAGCAGTGCGATATGAGACCTGTTGAGCAGTGCGATATGAGACCTGTTGAGCAGTGCGATATGAGACCTGTTGAGCAGTGCGATATGAGACCTGTTGAGCAGTGCGATATGAGACCTGTTGAGCAGTGCGATATGAGACCTGTTGAGCAGTGCGATATGAGACCTGTTGAACAGTGCGAGATGAGACCTGTTGAACAGTGCGAGATGAGACCTGTTGAACAGTGCGAGATGAGACCTGTTGAACAGTGCGAGATGAGACCTGTTGAACAGTGCGAGATGAGACCTGTTGAACAGTGCGAGATGAGACCTGTTGAACAGTGCGAGATGAGACCTGTTGAACAGTGCGAGATTAGAACTGCCGAACACTGCGAGATGAGAACTGCCGAACACTGCGAGACGAGAACTGCCGAAGAGGATGTTAGAAAAGAGAGTAGCATGATTGGTGACGAGAAGGAAGTTTTTGCCAGCATGGTTGGTGACGAGAAGGAAGTTTTCGCGAGCACGGTCGGTGATGATAAGGAAGTTTATGCCGCGGATTCGGTAATGGTGGATGCACAGGAAGAACCAGAACCAACAACAGCCATTAGAGAAGATTAA 2268 47.44 MAVTALLYHLPFWVFESLPYYWELFHLFRPFRIAYDLGYINFLDVSYHLSKVHQLMVEEERTEAGLGSGKELTMASSSFSGGKQLAVIEASSNCVPYPPPQTTYEEIVVNPKICMASLEKLHSIMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPVISDSSSCPSAATIPMQGMASMLPPSDNQTTFQQARATATGLPAGASSSASPAGGFPVIGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPPEQPAQQQVLQPGAVFAKDGATSTAPNAQRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGELWNKLKESERTVYQEKAMQDKERYRIEMEDYREKLRTGQVISDAVPLQQRLPEPDLNMVYVDKTEETEGGGSQTPDHDTSYVEGDSGEYKTEEKEEEEEEDDSEEASPQVGIGNVDVNIMVEEEHCETRPAEHCDMRPVEHCDMRPAEHCDMRPAEHCDMRPAEHCDMRPAEQCDMRPVEQCDMRPVEQCDMRPVEQCDMRPVEQCDMRPVEQCDMRPVEQCDMRPVEQCDMRPVEQCEMRPVEQCEMRPVEQCEMRPVEQCEMRPVEQCEMRPVEQCEMRPVEQCEMRPVEQCEIRTAEHCEMRTAEHCETRTAEEDVRKESSMIGDEKEVFASMVGDEKEVFASTVGDDKEVYAADSVMVDAQEEPEPTTAIRED 755
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5115783 5121262 + Hsped.03g03560.1 Hepe03g0356 565354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0356 755 SUPERFAMILY ARID-like 105 210 IPR036431 GO:0003677(InterPro)
Hepe03g0356 755 Coils Coil 392 412 - -
Hepe03g0356 755 FunFam High mobility group B protein 15 102 215 - -
Hepe03g0356 755 SUPERFAMILY HMG-box 336 415 IPR036910 -
Hepe03g0356 755 Gene3D - 105 202 IPR036431 GO:0003677(InterPro)
Hepe03g0356 755 SMART hmgende2 342 411 IPR009071 -
Hepe03g0356 755 CDD ARID_HMGB9-like 110 195 IPR045303 GO:0003677(InterPro)
Hepe03g0356 755 MobiDBLite consensus disorder prediction 468 484 - -
Hepe03g0356 755 Gene3D High mobility group box domain 327 422 IPR036910 -
Hepe03g0356 755 MobiDBLite consensus disorder prediction 314 349 - -
Hepe03g0356 755 MobiDBLite consensus disorder prediction 233 254 - -
Hepe03g0356 755 Pfam ARID/BRIGHT DNA binding domain 114 195 IPR001606 GO:0003677(InterPro)
Hepe03g0356 755 FunFam High mobility group B protein 15 325 420 - -
Hepe03g0356 755 ProSiteProfiles ARID domain profile. 108 199 IPR001606 GO:0003677(InterPro)
Hepe03g0356 755 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 76 458 - -
Hepe03g0356 755 CDD HMG-box_AtHMGB9-like 343 409 - -
Hepe03g0356 755 Pfam HMG (high mobility group) box 343 410 IPR009071 -
Hepe03g0356 755 SMART bright_3 109 200 IPR001606 GO:0003677(InterPro)
Hepe03g0356 755 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 343 410 IPR009071 -
Hepe03g0356 755 MobiDBLite consensus disorder prediction 443 492 - -
Hepe03g0356 755 SMART ARID_2 105 195 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0356 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2311 Hepe-Chr1:87744095 Hepe03g0356 Hepe-Chr3:5115783 2.65e-82 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g902 Blo01g00329 . . Bda08g00034 Bpe04g01069 . Bma04g01053 Bma05g01290 Cmo08g00997 . . . . . . . . . . . . . . . Cla06g00753 Cam06g0805 Cec06g0816 . Clacu06g0808 Cmu06g0781 Cre06g1559 . . Cone7ag0393 . . . Chy05g00556 . . . . . Bpe05g01140 . . . Sed09g0187 . . Cma08g01025 . Car08g00902 . . Cpe17g00251 Bhi12g01502 Tan06g2304 Cmetu04g1927 Lac12g2048 Hepe03g0356 . Lcy13g0460 . . . . . . . Lsi09g01146 . . Cme05g00713
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe03g0356 . 100 440 ARID Transcription Factor Family AT1G04880 58.7 3.5e-105 379.0
Hepe01g2371 . 135 414 ARID Transcription Factor Family AT1G20910 66.4 4.6e-101 365.2
Hepe06g0848 . 236 502 ARID Transcription Factor Family AT1G20910 60.7 3.7e-90 328.9
Hepe01g2311 . 16 309 ARID Transcription Factor Family AT1G76110 66.8 1.9e-111 399.4
Hepe01g2371 . 134 444 ARID Transcription Factor Family AT1G76510 72.8 3.9e-125 445.3
Hepe06g0848 . 223 532 ARID Transcription Factor Family AT1G76510 62.5 1.3e-109 393.7
Hepe02g1572 . 2 770 ARID Transcription Factor Family AT3G43240 59.0 7.6e-262 900.2
Hepe03g1390 . 2 772 ARID Transcription Factor Family AT3G43240 57.7 1.5e-257 885.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55217 PF01388 ARID 7.00E-16 CL0123 Hepe TR