Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0356 ATGGCTGTGACAGCTTTGTTGTACCATTTGCCTTTTTGGGTCTTTGAATCTTTACCTTATTACTGGGAGTTATTTCATTTGTTCAGACCCTTTCGGATTGCTTATGACCTCGGCTACATCAACTTCTTGGATGTAAGCTACCACTTAAGCAAAGTTCATCAGTTGATGGTAGAAGAGGAAAGAACAGAGGCAGGCTTGGGTAGCGGGAAGGAGTTGACCATGGCATCGTCTTCTTTCAGTGGCGGGAAGCAACTGGCAGTGATTGAAGCTTCTTCTAACTGTGTTCCATACCCACCACCGCAAACAACGTATGAGGAAATTGTAGTCAATCCCAAGATCTGTATGGCATCCTTGGAAAAGCTCCATTCTATCATGGGAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGGCTTTTCGTGGAGGTCACTTCTCGTGGTGGCATTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTCAACTTTCCTTCTACGGCGACCAATGCATCTTTTGTGCTGAGGAAGTATTATCTTTCACTGCTTCATCATTTTGAACAGATTTACTTCTTTAAAGCTGTGGGATGGACACCAGTAATTTCTGATTCCTCTTCATGCCCGAGTGCAGCGACAATTCCTATGCAAGGGATGGCCTCTATGTTGCCGCCATCAGATAATCAGACAACGTTCCAGCAGGCACGGGCTACTGCAACCGGACTTCCAGCAGGTGCTTCGAGTTCGGCATCACCAGCAGGAGGGTTTCCGGTGATCGGAGTCATTGACGGAAAATTTGATAGTGGGTATCTCGTTACTGTTACTGTAGGAACGGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTCCAGAGCAACCTGCTCAACAACAAGTGTTGCAGCCTGGTGCTGTTTTTGCCAAAGATGGTGCTACCTCCACTGCACCAAATGCTCAACGCCGTCGCCGTCGGAAGAAATCGGAGATAAAGCGAAGGGATCCTGCTCATCCAAAGCCGAACAGAAGTGGGTACAACTTCTTCTTTGCTGAGCAGCATGCTAGACTCAAACCATTATACCCAGGGAAGGACAGGGAGATAAGCAGAATGATTGGTGAGCTTTGGAATAAACTTAAAGAGTCTGAAAGAACAGTTTATCAGGAGAAAGCTATGCAAGATAAAGAAAGATACAGAATCGAGATGGAGGATTACAGAGAGAAGCTGAGGACAGGTCAAGTCATCAGTGATGCAGTGCCATTACAACAACGCCTTCCTGAGCCAGACCTGAATATGGTTTATGTTGACAAAACCGAAGAAACCGAGGGTGGCGGCTCTCAAACTCCGGATCATGATACTAGCTATGTCGAAGGCGACTCTGGAGAGTATAAAACGGAAGAGAAGGAGGAAGAAGAGGAAGAGGATGATTCAGAAGAAGCATCTCCACAAGTTGGAATTGGCAATGTGGATGTTAACATTATGGTTGAGGAGGAACACTGCGAGACGAGGCCTGCCGAGCACTGCGATATGAGACCTGTTGAACACTGCGATATGAGACCTGCCGAGCACTGCGATATGAGACCTGCCGAGCACTGCGATATGAGACCTGCCGAACACTGCGATATGAGACCTGCCGAACAGTGCGATATGAGACCTGTTGAGCAGTGCGATATGAGACCTGTTGAGCAGTGCGATATGAGACCTGTTGAGCAGTGCGATATGAGACCTGTTGAGCAGTGCGATATGAGACCTGTTGAGCAGTGCGATATGAGACCTGTTGAGCAGTGCGATATGAGACCTGTTGAGCAGTGCGATATGAGACCTGTTGAACAGTGCGAGATGAGACCTGTTGAACAGTGCGAGATGAGACCTGTTGAACAGTGCGAGATGAGACCTGTTGAACAGTGCGAGATGAGACCTGTTGAACAGTGCGAGATGAGACCTGTTGAACAGTGCGAGATGAGACCTGTTGAACAGTGCGAGATGAGACCTGTTGAACAGTGCGAGATTAGAACTGCCGAACACTGCGAGATGAGAACTGCCGAACACTGCGAGACGAGAACTGCCGAAGAGGATGTTAGAAAAGAGAGTAGCATGATTGGTGACGAGAAGGAAGTTTTTGCCAGCATGGTTGGTGACGAGAAGGAAGTTTTCGCGAGCACGGTCGGTGATGATAAGGAAGTTTATGCCGCGGATTCGGTAATGGTGGATGCACAGGAAGAACCAGAACCAACAACAGCCATTAGAGAAGATTAA 2268 47.44 MAVTALLYHLPFWVFESLPYYWELFHLFRPFRIAYDLGYINFLDVSYHLSKVHQLMVEEERTEAGLGSGKELTMASSSFSGGKQLAVIEASSNCVPYPPPQTTYEEIVVNPKICMASLEKLHSIMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPVISDSSSCPSAATIPMQGMASMLPPSDNQTTFQQARATATGLPAGASSSASPAGGFPVIGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPPEQPAQQQVLQPGAVFAKDGATSTAPNAQRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGELWNKLKESERTVYQEKAMQDKERYRIEMEDYREKLRTGQVISDAVPLQQRLPEPDLNMVYVDKTEETEGGGSQTPDHDTSYVEGDSGEYKTEEKEEEEEEDDSEEASPQVGIGNVDVNIMVEEEHCETRPAEHCDMRPVEHCDMRPAEHCDMRPAEHCDMRPAEHCDMRPAEQCDMRPVEQCDMRPVEQCDMRPVEQCDMRPVEQCDMRPVEQCDMRPVEQCDMRPVEQCDMRPVEQCEMRPVEQCEMRPVEQCEMRPVEQCEMRPVEQCEMRPVEQCEMRPVEQCEMRPVEQCEIRTAEHCEMRTAEHCETRTAEEDVRKESSMIGDEKEVFASMVGDEKEVFASTVGDDKEVYAADSVMVDAQEEPEPTTAIRED 755
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5115783 5121262 + Hsped.03g03560.1 Hepe03g0356 565354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0356 755 SUPERFAMILY ARID-like 105 210 IPR036431 GO:0003677(InterPro)
Hepe03g0356 755 Coils Coil 392 412 - -
Hepe03g0356 755 FunFam High mobility group B protein 15 102 215 - -
Hepe03g0356 755 SUPERFAMILY HMG-box 336 415 IPR036910 -
Hepe03g0356 755 Gene3D - 105 202 IPR036431 GO:0003677(InterPro)
Hepe03g0356 755 SMART hmgende2 342 411 IPR009071 -
Hepe03g0356 755 CDD ARID_HMGB9-like 110 195 IPR045303 GO:0003677(InterPro)
Hepe03g0356 755 MobiDBLite consensus disorder prediction 468 484 - -
Hepe03g0356 755 Gene3D High mobility group box domain 327 422 IPR036910 -
Hepe03g0356 755 MobiDBLite consensus disorder prediction 314 349 - -
Hepe03g0356 755 MobiDBLite consensus disorder prediction 233 254 - -
Hepe03g0356 755 Pfam ARID/BRIGHT DNA binding domain 114 195 IPR001606 GO:0003677(InterPro)
Hepe03g0356 755 FunFam High mobility group B protein 15 325 420 - -
Hepe03g0356 755 ProSiteProfiles ARID domain profile. 108 199 IPR001606 GO:0003677(InterPro)
Hepe03g0356 755 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 76 458 - -
Hepe03g0356 755 CDD HMG-box_AtHMGB9-like 343 409 - -
Hepe03g0356 755 Pfam HMG (high mobility group) box 343 410 IPR009071 -
Hepe03g0356 755 SMART bright_3 109 200 IPR001606 GO:0003677(InterPro)
Hepe03g0356 755 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 343 410 IPR009071 -
Hepe03g0356 755 MobiDBLite consensus disorder prediction 443 492 - -
Hepe03g0356 755 SMART ARID_2 105 195 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2311 Hepe-Chr1:87744095 Hepe03g0356 Hepe-Chr3:5115783 2.65e-82 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55217 PF01388 ARID 7.00E-16 CL0123 Hepe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0356 - - - 0.0