Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0361 ATGGGTCTCTTCCCATTTGCCGTTTTTTTGCTTTGGAGGTTTTGTTCGGTTCTTGGAACAATTCCGACCACCATTGATGGACCCTTTAAGCCTGTAACTGTCCCGCTTGATAAAAGCTTCCGAGGGTTGGCTGAGGACTTGCCGGAAACCGATCCGAGAGTTCAGAAGATTGGTGGGCAGTTTGAGCCGGAGCAGATTTCTGTTTCTCTCTCTGCAGATTATGACTCCGTTTGGATTTCTTGGATTACAGGGGACTTCCAAATTGGAGATGCTATTCAACCATTAGATCCCAAAAGAGTTGCGAGTATTGTAGTGTATGGGAAGTTCACAATGCCAATGAATAACCAAGCAGAGGGTTATTCTCTTATCTACAATCAACTTTATCCCTTTGAAGGCCTCAAGAACTACACTTCTGGAATTATACACCATGTTCGTCTAACGGGATTGGAGCCTGATACTTTGTACCAATATCAGTGTGGAGATCCTTCAGTTAAAGAAGAAATGAGTGATGTGTATTATTTCAGAACTATGCCTGTTTCTGGGCCTAAGAGTTATCCTAATAGAATAGCAGTGGTTGGGGATTTGGGCCTTACATACAACACTACATCAACAGTTGATCATATGTTGAGTAACCATCCTGACCTTGTTCTATTGATTGGGGATGTGAGTTATGCCAACTTATATCTTACAAATGGCACTGGCTCTGATTGTTACTCTTGTTCTTTTCCTGAAACTCCTATTCACGAAACTTATCAACCTCGTTGGGATTACTGGGGAAGGTATATGGAGCCTCTGGTATCCAAAGTTCCATTAATGGTGGTGGAAGGGAACCATGAGATTGAACTGCAAGCTGAAAATCAAACATTTGCGGCATATAGTTCCCGATTTGCATTCCCATCCAAAGAGAGTAACTCGTCTTCGACATTTTACTACTCCTTCAATGCAGGCGGCATTCATTTCATAATGCTCGGTGCCTACATTTCATATGACAGATCTGGTGACCAATACGAATGGCTAGAGCAAGACCTGGCTAAAGTTGACAGGAAAGTTACTCCATGGTTGATAGCTACATGGCACCCACCCTGGTACAGCACCTACACTGCCCATTATAGAGAAGCAGAGTGCATGAAATTGGCAATGGAAGACTTGCTCTATAAGTATAAAGTTGACATCGTCTTCAACGGCCATGTTCATGCCTATGAGAGGTCAAATAGAGTATATAACTACACTTTGGATCGATGTGGTCCCGTCTACATAACAGTAGGCGATGGAGGTAATCGAGAGAAAATGTCGATTGAACATGCTGATGAACCTGGAAACTGTCCGGATCCATTCTCGACACCGGATGTATACATGGGTGGTTTCTGTGCATTCAATTTCACATCAGGCCCGGCTAAAGGAGAATTCTGCTGGGATCAGCAACCTGATTATAGTGCTTATCGTGAAAGTAGTTTTGGCCATGGCATTTTGGAGGTGAAAAACGAAACTCATGCTTTGTGGACTTGGCATCGAAACCAGGACTCGTATAATTCGGTTGGAGATATAATATATATCGTACGACAACCAGAAATTTGTGTAATTGAGCAGAAGGTACATACATACAGGCATGGAAAACAAGAAGATATGTGA 1629 42.73 MGLFPFAVFLLWRFCSVLGTIPTTIDGPFKPVTVPLDKSFRGLAEDLPETDPRVQKIGGQFEPEQISVSLSADYDSVWISWITGDFQIGDAIQPLDPKRVASIVVYGKFTMPMNNQAEGYSLIYNQLYPFEGLKNYTSGIIHHVRLTGLEPDTLYQYQCGDPSVKEEMSDVYYFRTMPVSGPKSYPNRIAVVGDLGLTYNTTSTVDHMLSNHPDLVLLIGDVSYANLYLTNGTGSDCYSCSFPETPIHETYQPRWDYWGRYMEPLVSKVPLMVVEGNHEIELQAENQTFAAYSSRFAFPSKESNSSSTFYYSFNAGGIHFIMLGAYISYDRSGDQYEWLEQDLAKVDRKVTPWLIATWHPPWYSTYTAHYREAECMKLAMEDLLYKYKVDIVFNGHVHAYERSNRVYNYTLDRCGPVYITVGDGGNREKMSIEHADEPGNCPDPFSTPDVYMGGFCAFNFTSGPAKGEFCWDQQPDYSAYRESSFGHGILEVKNETHALWTWHRNQDSYNSVGDIIYIVRQPEICVIEQKVHTYRHGKQEDM 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5169788 5175966 - Hsped.03g03610.1 Hepe03g0361 565359

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0361 542 Pfam Iron/zinc purple acid phosphatase-like protein C 469 514 IPR025733 -
Hepe03g0361 542 Gene3D - 183 444 IPR029052 -
Hepe03g0361 542 Gene3D - 449 530 IPR029052 -
Hepe03g0361 542 SUPERFAMILY Purple acid phosphatase, N-terminal domain 42 178 IPR008963 GO:0003993(InterPro)|GO:0046872(InterPro)
Hepe03g0361 542 Gene3D - 62 179 - -
Hepe03g0361 542 FunFam Purple acid phosphatase 183 445 - -
Hepe03g0361 542 CDD MPP_PAPs 183 520 IPR041792 -
Hepe03g0361 542 SUPERFAMILY Metallo-dependent phosphatases 188 510 IPR029052 -
Hepe03g0361 542 PANTHER ACID PHOSPHATASE RELATED 8 529 IPR039331 GO:0003993(InterPro)
Hepe03g0361 542 Pfam Calcineurin-like phosphoesterase 188 400 IPR004843 GO:0016787(InterPro)
Hepe03g0361 542 Pfam Purple acid Phosphatase, N-terminal domain 63 176 IPR015914 GO:0003993(InterPro)|GO:0046872(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0361 K22390 - - csv:101214711 1060.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0361 Hepe-Chr3:5169788 Hepe05g1733 Hepe-Chr5:67597869 3.03e-241 dispersed
Hepe03g0361 Hepe-Chr3:5169788 Hepe10g0598 Hepe-Chr10:7325502 4.68e-83 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g907 . . Bda03g01128 . . . Bma04g01056 . . Cmo17g00102 . . . . . . . . . . . . . . Cla06g00762 Cam06g0811 Cec06g0823 Cco06g0829 Clacu06g0813 Cmu06g0787 Cre06g1565 . . . . . . Chy05g00561 . . . . . . . . . Sed09g0186 . . . Cma17g00099 . Car17g00088 Cpe12g00088 . Bhi12g01497 Tan06g2299 Cmetu05g0011 . Hepe03g0361 . . . . . . . . . Lsi09g01138 . . Cme05g00719
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004148 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 2 2 7 1 1 43