Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0369 ATGGCGGGCTTATCGCTCCAGTGCGGCGATTGTGGCGCACTCTTGAGATCCGTAGAAGAAGCTCAACAACATGCCGAACTCACTTCTCACTCCAACTTCTCTGAGTCCACTGAGGCTGTGCTCAATCTCGTCTGCACTGCTTGCGGCAAACCCTGCCGATCCAAGACGGAAAGTGATTTGCACACGAAAAGGACTGGCCATACCGAGTTTGCTGATAAGACTTTGGAGGCTGCTAAACCAATAAGCTTGGAGGCCCCGAAGGTCGCTGTGGAATCAGAAGATGGTGGAGATGCAAGTGCTAGCAAGTCTGAAGAAATGGTTGTGCCAGAGGTGAACAAGAATATATTAGAGGAACTTGAAGCTATGGGCTTCCCAACAGCACGAGCAACTCGTGCACTTTTTTATTCTGGTAATGCCAGTCTTGAGGCTGCAGTCAATTGGGTAGTCGAACATGAGAATGATCCAGAGATAGATCAGATGCCTTTGGTTCCTAAGGACACAATGGTTGAGGCTTCAAAGCCTTCTCTTACACCGGAGCAACTAAAAGCAAAACAGCAGGAGCTAAGGGAACGGGCTCGGAAGAAAAAAGAGGAGGAAGAGAAGATGTCAGAGAGAGAAAAGGAAAAGGAGAGAATTCGAATTGGAAAGGATCTCTTAGAAGCAAAAAGGATCGAGGAAGACAATGAGAGAAAAAGAATATTAGCCTTGAGAAAAGCTGAAAAAGAAGAAGAGAGAAGAGCCAGAGAAAAAATTCGTCAAAAACTTGAAGAGGACAAGGCAGAAAGAAGACGGAGGCTTGGATTGCCACCAGAAGATCCTTCAACTGCAAAGCCTCCAGCACCTGTTGTTGAAGAGAAAAAGATCTCATTGCCGATTAGACCTGCTTCAAAGACAGAGCAAATGAGAGAATGTTTGCGATCATTAAAGTCCAACCACAAGGAGGATGATGCCAGAGTGAAGAGAGCGTTTCAAACCCTTCTAACTTATGTGGGAAACGTGGCAAAAAATCCTGATGAAGAGAAGTTCAGAAAAATTAGACTTAGCAACCAAACTTTCCAGGATAGAGTGGGTGCACTGAGAGGGGGAATTGAGTTTCTAGAGTTTTGTGGGTTTGAGAAAATTGAAGGTGGTGAGTTCTTGTTTCTGCCCAGAGACAAGGTTGACAAGGCAGTGCTTAATTCAGCTGGCTCTGAGCTCGACTCTGCAATAAAGAATCCCTTCTTTGGTATTCTCTAA 1236 45.39 MAGLSLQCGDCGALLRSVEEAQQHAELTSHSNFSESTEAVLNLVCTACGKPCRSKTESDLHTKRTGHTEFADKTLEAAKPISLEAPKVAVESEDGGDASASKSEEMVVPEVNKNILEELEAMGFPTARATRALFYSGNASLEAAVNWVVEHENDPEIDQMPLVPKDTMVEASKPSLTPEQLKAKQQELRERARKKKEEEEKMSEREKEKERIRIGKDLLEAKRIEEDNERKRILALRKAEKEEERRAREKIRQKLEEDKAERRRRLGLPPEDPSTAKPPAPVVEEKKISLPIRPASKTEQMRECLRSLKSNHKEDDARVKRAFQTLLTYVGNVAKNPDEEKFRKIRLSNQTFQDRVGALRGGIEFLEFCGFEKIEGGEFLFLPRDKVDKAVLNSAGSELDSAIKNPFFGIL 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5242094 5252556 - Hsped.03g03690.1 Hepe03g0369 565367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0369 411 SUPERFAMILY UBA-like 97 164 IPR009060 GO:0005515(InterPro)
Hepe03g0369 411 PANTHER F13M7.16 PROTEIN 1 411 - -
Hepe03g0369 411 SMART uba_6 112 150 IPR015940 -
Hepe03g0369 411 MobiDBLite consensus disorder prediction 253 270 - -
Hepe03g0369 411 Coils Coil 181 213 - -
Hepe03g0369 411 Gene3D - 303 401 - -
Hepe03g0369 411 Pfam UBA-like domain 112 159 IPR015940 -
Hepe03g0369 411 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 110 151 IPR015940 -
Hepe03g0369 411 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Hepe03g0369 411 CDD PUB_UBA_plant 305 411 - -
Hepe03g0369 411 CDD UBA_PUB_plant 110 158 - -
Hepe03g0369 411 MobiDBLite consensus disorder prediction 183 210 - -
Hepe03g0369 411 Pfam PUB domain 318 389 IPR018997 -
Hepe03g0369 411 SUPERFAMILY PUG domain-like 298 407 IPR036339 -
Hepe03g0369 411 Coils Coil 224 261 - -
Hepe03g0369 411 ProSitePatterns Zinc finger C2H2 type domain signature. 45 67 IPR013087 -
Hepe03g0369 411 MobiDBLite consensus disorder prediction 253 281 - -
Hepe03g0369 411 Gene3D - 113 157 - -
Hepe03g0369 411 SMART PGNneu 321 384 - -
Hepe03g0369 411 MobiDBLite consensus disorder prediction 170 210 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1345 Hepe-Chr1:78622934 Hepe03g0369 Hepe-Chr3:5242094 2.08e-06 dispersed
Hepe03g0369 Hepe-Chr3:5242094 Hepe08g2157 Hepe-Chr8:60798952 3.07e-71 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0369 K24348 - csv:101215434 707.597