Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0378 ATGCGTACCTGCGGTTTGGCTTTATCAGGTACCGATTCACGTTCCTTTTTACCGGCGATGCCTCCGATCTTCGCTCCGAGGAGAGCCACGCCGCCGGACAGAAATTCTCAGGTTCTGTTCCCCAAATCGGCACGGCCTCCGTCTGCTTGCATCAGAGCGAAGGCTGCCGTCGCAAACGAGGCGGTTGTCTCCGGCGCCGTCGAGGTGAGCTTCTACGAGCTTTTAGGAGTGCAGGAGTCGGTGTCGATGGTGGAGATTAAGCAAGCCTACAAGCAGATGGCTCGGAAATATCATCCGGACGTCTCGCCGCCGGACCGGATCGAGGAGTATACCAGGAAGTTCATCCAGGTTCAGGAGGCGTACGAAACGTTGTCCGATCCTAGTACGAGAGCTTTGTATGATAGAGACATAGCGAGAGGTATTCACCTTGCTTTCTCTGCTCGAAGACGCGGCTACAATCATGAGGAAATGGAAGAGAAAAGCGGGTGGGAGAACCGTTGGCGGGATCAGCTATCGGAATTGAAGAGAAGAAGCACGGACAAAGATTCAAGAGCAAGCATGTCGTGGGGAGCTCAAATGCGCAAGAAAAGGGACGGCGACAATGACGATGACGGCGCCGCATAA 624 54.49 MRTCGLALSGTDSRSFLPAMPPIFAPRRATPPDRNSQVLFPKSARPPSACIRAKAAVANEAVVSGAVEVSFYELLGVQESVSMVEIKQAYKQMARKYHPDVSPPDRIEEYTRKFIQVQEAYETLSDPSTRALYDRDIARGIHLAFSARRRGYNHEEMEEKSGWENRWRDQLSELKRRSTDKDSRASMSWGAQMRKKRDGDNDDDGAA 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5431821 5433662 - Hsped.03g03780.1 Hepe03g0378 565376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0378 207 Gene3D DnaJ domain 58 162 IPR036869 -
Hepe03g0378 207 CDD DnaJ 71 126 IPR001623 -
Hepe03g0378 207 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 42 198 IPR053232 GO:0009507(PANTHER)|GO:0061077(PANTHER)
Hepe03g0378 207 ProSiteProfiles dnaJ domain profile. 70 137 IPR001623 -
Hepe03g0378 207 PRINTS DnaJ domain signature 109 129 IPR001623 -
Hepe03g0378 207 PRINTS DnaJ domain signature 72 90 IPR001623 -
Hepe03g0378 207 PRINTS DnaJ domain signature 90 105 IPR001623 -
Hepe03g0378 207 SMART dnaj_3 69 129 IPR001623 -
Hepe03g0378 207 MobiDBLite consensus disorder prediction 174 207 - -
Hepe03g0378 207 SUPERFAMILY Chaperone J-domain 69 141 IPR036869 -
Hepe03g0378 207 MobiDBLite consensus disorder prediction 191 207 - -
Hepe03g0378 207 ProSitePatterns Nt-dnaJ domain signature. 114 133 IPR018253 -
Hepe03g0378 207 Pfam DnaJ domain 71 134 IPR001623 -
Hepe03g0378 207 FunFam Chaperone protein dnaJ 20, chloroplastic 56 165 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0378 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0378 Hepe-Chr3:5431821 Hepe04g1875 Hepe-Chr4:73698710 6.44e-11 dispersed
Hepe02g3087 Hepe-Chr2:80030935 Hepe03g0378 Hepe-Chr3:5431821 7.92e-06 transposed
Hepe06g0655 Hepe-Chr6:49660736 Hepe03g0378 Hepe-Chr3:5431821 1.21e-13 transposed
Hepe10g1923 Hepe-Chr10:56053620 Hepe03g0378 Hepe-Chr3:5431821 4.32e-14 transposed
Hepe03g0378 Hepe-Chr3:5431821 Hepe05g1777 Hepe-Chr5:68077309 2.39e-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g931 . . . . . . . . . Cmo17g00091 . Cma14g01907 Car06g01052 Car14g01708 Sed02g1527 Cpe08g00413 Cpe03g01608 Bhi01g00197 Tan10g0493 Cmetu06g2051 Lac12g2015 Hepe05g1777 . Lcy11g1792 . . . . . . . Cone14ag0245 Cone15ag0262 Cone7ag0410 . Lsi05g01860 . . Cme06g00366 . . Bda11g00324 Bda13g00476 . Bpe13g00869 Bma02g01194 Bma06g01272 Sed09g0169 Cmo06g01237 Cmo14g01962 . Cma17g00085 . Car17g00080 Cpe12g00078 . Bhi12g01476 Tan06g2282 Cmetu05g1668 . Hepe03g0378 . . Cla05g00330 Cam05g0360 Cec05g0364 Cco05g0366 Clacu05g0357 Cmu05g0342 Cre05g0405 Lsi09g01122 Csa03g01076 Chy06g00346 Cme05g00736
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002087 3 2 2 2 2 2 4 2 1 1 1 1 4 2 1 4 1 3 4 2 1 2 2 2 2 2 2 3 2 1 63