Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0389 ATGTTCTTGATTTCGGAGAGGTTTCCGAGGAGGAAAGATTCGTCTTCAATGGTGTCCGAACTCAAATTACAGAGAAAATCGTTGGCCATGAAGAAAACTCTCGGCCGTCAGAAGATAGAAATTAAAAAGTTAGAGAAGAAAAGCAGTAAACAAGTCACGTTTTCGAAGCGCCGCGCCGGACTTTTCAAGAAGGCCGGCGAGCTCTCTGTTTTGTGTGGAGCAGAGGTTGCCATCATCGTCTTCTCTCCCAACGATAAGCTCTTTTGTTTCGGCCATCCCGATGTCGATGTGCTTTTGGATCGCTTTCTCACAAGAAAGTTGTCCCCGCCGCAGCCGGCGGAGAGCTACGTCCCTGTGTCGGAGTTCAACCGTGATTTTGCCGATTTAACGGCGGAATTCGAGGCCGAGAAAAAGCGAGCGGCGGATTCGAGGATGAATGGAGGGTTATGGTGGGAGGAGCCGGTGGAAGGGATGAGATTGGAGGAATTGAAGGACTTTCGATCGGCATTGATGGATTTGAGAGCTAAAGTGGCAGAGCGAGTCGAGGAATTGACGGCGGTTAGAATCGGAGGGCCTCTGTTGCCGGCGCTGCCTCCGCCAGTTGCTGCACCGTCGACGTCGTCGTTTCATCAATGTCCGCCTCCGACGACGATTCATGTCGCCGGAAACTCCCATGTCGTGACGGGGTTAGGATTCTTCTAG 702 51.99 MFLISERFPRRKDSSSMVSELKLQRKSLAMKKTLGRQKIEIKKLEKKSSKQVTFSKRRAGLFKKAGELSVLCGAEVAIIVFSPNDKLFCFGHPDVDVLLDRFLTRKLSPPQPAESYVPVSEFNRDFADLTAEFEAEKKRAADSRMNGGLWWEEPVEGMRLEELKDFRSALMDLRAKVAERVEELTAVRIGGPLLPALPPPVAAPSTSSFHQCPPPTTIHVAGNSHVVTGLGFF 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5610531 5611345 + Hsped.03g03890.1 Hepe03g0389 565387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0389 233 PRINTS MADS domain signature 56 71 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g0389 233 PRINTS MADS domain signature 36 56 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g0389 233 PRINTS MADS domain signature 71 92 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g0389 233 FunFam Agamous-like MADS-box protein AGL62 46 111 - -
Hepe03g0389 233 ProSitePatterns MADS-box domain signature. 36 90 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g0389 233 PANTHER SERUM RESPONSE FACTOR HOMOLOG 35 175 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe03g0389 233 Gene3D - 46 113 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g0389 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 43 90 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g0389 233 ProSiteProfiles MADS-box domain profile. 34 94 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g0389 233 SMART madsneu2 34 93 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g0389 233 SUPERFAMILY SRF-like 35 105 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0389 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0389 Hepe-Chr3:5610531 Hepe08g1183 Hepe-Chr8:12144669 2.73e-70 dispersed
Hepe03g0388 Hepe-Chr3:5604374 Hepe03g0389 Hepe-Chr3:5610531 1.81e-138 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g177 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g01461 . . . Hepe03g0389 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000961 2 4 1 4 2 2 4 2 2 2 2 2 4 2 5 4 2 0 4 2 2 4 6 3 2 3 2 2 3 1 80
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55220 PF00319 SRF-TF 9.40E-24 No_clan Hepe TF