Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0405 ATGGAGGTTCGAAAATCAGAAAACGACCATGTAGTCCTCACCATCGACCCGCCGGAGAAGGAACAAATCTCACCATCTCCGACCAGAACCAAAACCCTCCGCCGTCTCACTTTCTCAAAACCCAAATCCCGCTTCGACGAACCCAATCATTTCCCCCTTTCCACTCCCAAAACCATCCCCGAATCCACAGACCTCCCAGATCAAGACGGCGACACCACTTCTTCATCGAATTCATCTTCCTCCTCCTCATCGGAGTACGAAGACGATGAAGAAATCGGACGAGATCAAAAAGGCGGACGAAGACGGAAGAGAAAAGTAAAGAGGAAGAAAATCAATAAACGAGCATTAATCGAATGGATACTCTTCCTCACTATAATCACCTGCTTAATCTGTGCCCTAACTCTGAAATCGCTTCAAGAAAAGCAGATTTGGAGCTTAGAGGTCTGGAAATGGTGTTTAATCGTAATGGTGATTTTCTGCGGGCGTTTAGTTTCCGAATGGCTCGTCGGCGTACTCGTGTTCGTAATCGAACGAAACTTCATGCTCCGCGAACGAGTTCTCTACTTCGTCTACGGCCTCCGGAAGAGCTTCCAGAACTGCGCTTGGTTAGGGCTGGTTCTAATCGCTTGGATGATAATGTTCCCGGACGTTCACCACAACAATAAGGTTCTCCTCAAGGTGTTCCGATTCCTAATCGCCGTCTTAGTCGGGGCGACGATCTGGCTTCTGAAGATCCTTCTGGTGAAAGTTCTGGCGTCGTCGTTCCATGTGGCGACGTTCTTCGATCGGATGAAGGAGAGCGTGTTCAACCACTACATTCTCGAGACGCTGTCCGGAGTGCCGCTGGATGAGGAGGAGATGGACGAGGATGTGAATCGGAGGAGGCGGTTGTTGCAGATGTCGAAATCGATGCCGGTGAGGTGGAGAGACGGCGGCGGAGGAGAGAGTTTGTCGAGATCGAAGAGGCAGGGGTCGTGTAAGAAGATCGATATGGAGAGGTTGAGGAAACTGAGCTTGAAGGGGAGATCGTCGGCGTGGACGGTGAAGAGATTGGTGAGCTATGTGAGATCGTCGGGATTGTCGACGATATCGAGGACGGTGGATGATTTTTCCACCGCCGAATCGGAGATTACCAGTGAATCGGAGGCTAGGAACTGTGCTCACAGAGTGTTCAAGAACGTTGCTAAGCCTGCTGCCAGATACATTGAAGAAGAAGATCTACTGAGATTCCTGAAGGTAGAAGAAGTGAACACCATCTTCCCTCTCTTTGAAGGCGCCATTGAAACAGGAAAAATCTCCAAATCCACTTTCAGAAACTGGGTGGTTTATGCCTACATCGAGCGGAAAGCATTGGCGCATTCGTTGAACGACACCAAAACCGCTGTCCAGCAGCTCCATAAGCTGGCCAGCGCCATCGTCATTGTGATCATCATAGTCATTTCTCTTCTCGTTCTCGGCGTCGCCACCACTAAGGTCCTCTTCGTCGTCACCTCTCAGCTTCTCCTTGTCGGATTCATGTTCCAAAACACCTGCAAAACCATCTTCGAATCGATCATTTTTGTCTTCGTTATGCACCCTTTCGATGTAGGCGATCGCTGCGTCATCGACGGCGTCCATATGTTTGTAGAAGAGATGAACATTTTGTCGACGGTGTTCTTGAGATTCGACAATGAGAAGATTTACTATCCCAACTCTGTTCTGCTGACGAAGCCAATAAGCAATTTCAGGAGAAGTCCCGACATGTCGGATACGGTGGATTTCACCATTGATGTTTCCACTTCTTTTGACAACATCACAGCCCTCAGGAAGGCAATGCAAATATACATTGAGAGCAAACCAAAGCATTGGAGTCCAAAACACTCATTGGTAGTGAAAGAGATTGAGAATGTGGACAAGATGAAGATGAGTATGTGTGTGCAGCACACAATGAACCATCAAAACTTCCCTGAAAGAAACAGCAGAAGATCAGACCTCATTTTTGAACTCAAAAGGGTTTTTGAGCTTCTGGGCATCAAATACCATCTCCTTCCTCAAGAAGTTGTCGTCACTCGGCTCGATTTAACTAATGGCAGAATGGCGATCCCGTCTTCGTGA 2094 48.23 MEVRKSENDHVVLTIDPPEKEQISPSPTRTKTLRRLTFSKPKSRFDEPNHFPLSTPKTIPESTDLPDQDGDTTSSSNSSSSSSSEYEDDEEIGRDQKGGRRRKRKVKRKKINKRALIEWILFLTIITCLICALTLKSLQEKQIWSLEVWKWCLIVMVIFCGRLVSEWLVGVLVFVIERNFMLRERVLYFVYGLRKSFQNCAWLGLVLIAWMIMFPDVHHNNKVLLKVFRFLIAVLVGATIWLLKILLVKVLASSFHVATFFDRMKESVFNHYILETLSGVPLDEEEMDEDVNRRRRLLQMSKSMPVRWRDGGGGESLSRSKRQGSCKKIDMERLRKLSLKGRSSAWTVKRLVSYVRSSGLSTISRTVDDFSTAESEITSESEARNCAHRVFKNVAKPAARYIEEEDLLRFLKVEEVNTIFPLFEGAIETGKISKSTFRNWVVYAYIERKALAHSLNDTKTAVQQLHKLASAIVIVIIIVISLLVLGVATTKVLFVVTSQLLLVGFMFQNTCKTIFESIIFVFVMHPFDVGDRCVIDGVHMFVEEMNILSTVFLRFDNEKIYYPNSVLLTKPISNFRRSPDMSDTVDFTIDVSTSFDNITALRKAMQIYIESKPKHWSPKHSLVVKEIENVDKMKMSMCVQHTMNHQNFPERNSRRSDLIFELKRVFELLGIKYHLLPQEVVVTRLDLTNGRMAIPSS 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5803083 5815716 + Hsped.03g04050.1 Hepe03g0405 565403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0405 697 SUPERFAMILY Sm-like ribonucleoproteins 516 575 IPR010920 -
Hepe03g0405 697 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 24 688 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
Hepe03g0405 697 Pfam Mechanosensitive ion channel, beta-domain 519 577 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe03g0405 697 MobiDBLite consensus disorder prediction 1 16 - -
Hepe03g0405 697 PIRSF Memb_At2g17000 4 695 IPR016688 -
Hepe03g0405 697 Gene3D - 526 575 IPR023408 -
Hepe03g0405 697 MobiDBLite consensus disorder prediction 1 105 - -
Hepe03g0405 697 MobiDBLite consensus disorder prediction 55 83 - -
Hepe03g0405 697 FunFam Predicted mechanosensitive ion channel 526 575 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0405 Hepe-Chr3:5803083 Hepe09g0905 Hepe-Chr9:9063865 1.37e-207 dispersed
Hepe03g0405 Hepe-Chr3:5803083 Hepe08g0320 Hepe-Chr8:2865666 1.66e-164 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0405 K22048 - csv:101206752 1160.98