Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0405 ATGGAGGTTCGAAAATCAGAAAACGACCATGTAGTCCTCACCATCGACCCGCCGGAGAAGGAACAAATCTCACCATCTCCGACCAGAACCAAAACCCTCCGCCGTCTCACTTTCTCAAAACCCAAATCCCGCTTCGACGAACCCAATCATTTCCCCCTTTCCACTCCCAAAACCATCCCCGAATCCACAGACCTCCCAGATCAAGACGGCGACACCACTTCTTCATCGAATTCATCTTCCTCCTCCTCATCGGAGTACGAAGACGATGAAGAAATCGGACGAGATCAAAAAGGCGGACGAAGACGGAAGAGAAAAGTAAAGAGGAAGAAAATCAATAAACGAGCATTAATCGAATGGATACTCTTCCTCACTATAATCACCTGCTTAATCTGTGCCCTAACTCTGAAATCGCTTCAAGAAAAGCAGATTTGGAGCTTAGAGGTCTGGAAATGGTGTTTAATCGTAATGGTGATTTTCTGCGGGCGTTTAGTTTCCGAATGGCTCGTCGGCGTACTCGTGTTCGTAATCGAACGAAACTTCATGCTCCGCGAACGAGTTCTCTACTTCGTCTACGGCCTCCGGAAGAGCTTCCAGAACTGCGCTTGGTTAGGGCTGGTTCTAATCGCTTGGATGATAATGTTCCCGGACGTTCACCACAACAATAAGGTTCTCCTCAAGGTGTTCCGATTCCTAATCGCCGTCTTAGTCGGGGCGACGATCTGGCTTCTGAAGATCCTTCTGGTGAAAGTTCTGGCGTCGTCGTTCCATGTGGCGACGTTCTTCGATCGGATGAAGGAGAGCGTGTTCAACCACTACATTCTCGAGACGCTGTCCGGAGTGCCGCTGGATGAGGAGGAGATGGACGAGGATGTGAATCGGAGGAGGCGGTTGTTGCAGATGTCGAAATCGATGCCGGTGAGGTGGAGAGACGGCGGCGGAGGAGAGAGTTTGTCGAGATCGAAGAGGCAGGGGTCGTGTAAGAAGATCGATATGGAGAGGTTGAGGAAACTGAGCTTGAAGGGGAGATCGTCGGCGTGGACGGTGAAGAGATTGGTGAGCTATGTGAGATCGTCGGGATTGTCGACGATATCGAGGACGGTGGATGATTTTTCCACCGCCGAATCGGAGATTACCAGTGAATCGGAGGCTAGGAACTGTGCTCACAGAGTGTTCAAGAACGTTGCTAAGCCTGCTGCCAGATACATTGAAGAAGAAGATCTACTGAGATTCCTGAAGGTAGAAGAAGTGAACACCATCTTCCCTCTCTTTGAAGGCGCCATTGAAACAGGAAAAATCTCCAAATCCACTTTCAGAAACTGGGTGGTTTATGCCTACATCGAGCGGAAAGCATTGGCGCATTCGTTGAACGACACCAAAACCGCTGTCCAGCAGCTCCATAAGCTGGCCAGCGCCATCGTCATTGTGATCATCATAGTCATTTCTCTTCTCGTTCTCGGCGTCGCCACCACTAAGGTCCTCTTCGTCGTCACCTCTCAGCTTCTCCTTGTCGGATTCATGTTCCAAAACACCTGCAAAACCATCTTCGAATCGATCATTTTTGTCTTCGTTATGCACCCTTTCGATGTAGGCGATCGCTGCGTCATCGACGGCGTCCATATGTTTGTAGAAGAGATGAACATTTTGTCGACGGTGTTCTTGAGATTCGACAATGAGAAGATTTACTATCCCAACTCTGTTCTGCTGACGAAGCCAATAAGCAATTTCAGGAGAAGTCCCGACATGTCGGATACGGTGGATTTCACCATTGATGTTTCCACTTCTTTTGACAACATCACAGCCCTCAGGAAGGCAATGCAAATATACATTGAGAGCAAACCAAAGCATTGGAGTCCAAAACACTCATTGGTAGTGAAAGAGATTGAGAATGTGGACAAGATGAAGATGAGTATGTGTGTGCAGCACACAATGAACCATCAAAACTTCCCTGAAAGAAACAGCAGAAGATCAGACCTCATTTTTGAACTCAAAAGGGTTTTTGAGCTTCTGGGCATCAAATACCATCTCCTTCCTCAAGAAGTTGTCGTCACTCGGCTCGATTTAACTAATGGCAGAATGGCGATCCCGTCTTCGTGA 2094 48.23 MEVRKSENDHVVLTIDPPEKEQISPSPTRTKTLRRLTFSKPKSRFDEPNHFPLSTPKTIPESTDLPDQDGDTTSSSNSSSSSSSEYEDDEEIGRDQKGGRRRKRKVKRKKINKRALIEWILFLTIITCLICALTLKSLQEKQIWSLEVWKWCLIVMVIFCGRLVSEWLVGVLVFVIERNFMLRERVLYFVYGLRKSFQNCAWLGLVLIAWMIMFPDVHHNNKVLLKVFRFLIAVLVGATIWLLKILLVKVLASSFHVATFFDRMKESVFNHYILETLSGVPLDEEEMDEDVNRRRRLLQMSKSMPVRWRDGGGGESLSRSKRQGSCKKIDMERLRKLSLKGRSSAWTVKRLVSYVRSSGLSTISRTVDDFSTAESEITSESEARNCAHRVFKNVAKPAARYIEEEDLLRFLKVEEVNTIFPLFEGAIETGKISKSTFRNWVVYAYIERKALAHSLNDTKTAVQQLHKLASAIVIVIIIVISLLVLGVATTKVLFVVTSQLLLVGFMFQNTCKTIFESIIFVFVMHPFDVGDRCVIDGVHMFVEEMNILSTVFLRFDNEKIYYPNSVLLTKPISNFRRSPDMSDTVDFTIDVSTSFDNITALRKAMQIYIESKPKHWSPKHSLVVKEIENVDKMKMSMCVQHTMNHQNFPERNSRRSDLIFELKRVFELLGIKYHLLPQEVVVTRLDLTNGRMAIPSS 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5803083 5815716 + Hsped.03g04050.1 Hepe03g0405 565403

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0405 697 SUPERFAMILY Sm-like ribonucleoproteins 516 575 IPR010920 -
Hepe03g0405 697 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 24 688 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
Hepe03g0405 697 Pfam Mechanosensitive ion channel, beta-domain 519 577 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe03g0405 697 MobiDBLite consensus disorder prediction 1 16 - -
Hepe03g0405 697 PIRSF Memb_At2g17000 4 695 IPR016688 -
Hepe03g0405 697 Gene3D - 526 575 IPR023408 -
Hepe03g0405 697 MobiDBLite consensus disorder prediction 1 105 - -
Hepe03g0405 697 MobiDBLite consensus disorder prediction 55 83 - -
Hepe03g0405 697 FunFam Predicted mechanosensitive ion channel 526 575 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0405 K22048 - - csv:101206752 1160.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0405 Hepe-Chr3:5803083 Hepe09g0905 Hepe-Chr9:9063865 1.37e-207 dispersed
Hepe03g0405 Hepe-Chr3:5803083 Hepe08g0320 Hepe-Chr8:2865666 1.66e-164 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe05g1964 . 122 510 Mechanosensitive Ion Channel Family AT4G00290 65.6 4.6e-146 515.0
Hepe10g0430 . 10 688 Mechanosensitive Ion Channel Family AT5G10490 57.1 1.9e-200 696.0
Hepe07g0565 . 64 724 Mechanosensitive Ion Channel Family AT5G10490 57.9 2.5e-195 679.1
Hepe10g0430 . 10 653 Mechanosensitive Ion Channel Family AT1G58200 56.9 1.5e-192 669.8
Hepe07g0565 . 6 696 Mechanosensitive Ion Channel Family AT1G58200 51.4 3.2e-174 609.0
Hepe08g0320 . 39 920 Mechanosensitive Ion Channel Family AT1G53470 55.5 3.4e-261 898.3
Hepe08g0320 . 39 915 Mechanosensitive Ion Channel Family AT3G14810 51.8 3.1e-243 838.6
Hepe08g0320 . 39 920 Mechanosensitive Ion Channel Family AT1G78610 58.4 3.9e-278 954.5
Hepe08g0320 . 216 916 Mechanosensitive Ion Channel Family AT2G17000 60.2 3.4e-234 808.5
Hepe09g0905 . 58 754 Mechanosensitive Ion Channel Family AT5G12080 53.0 6.0e-195 677.9
Hepe03g0405 . 108 684 Mechanosensitive Ion Channel Family AT5G12080 50.3 2.6e-150 529.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008176 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35