Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0422 ATGGCTACTTTAAACTTAGGCTCCGCTTCTCACTTTGTTGACCAGCTTCAGCAACGCCCTGATCTCCACTTAGAAACGCCGCCAAATTCCGACCATGTCACTAATCTCAACCACTTCAACGGAAGCGGCGGTGGCGGTGGCGGCTCTGGCGGTAGCGGCGATCTCATGATTCGTCGCCCTAGGGGCCGCCCGGCCGGGTCCAAGAACAAGATGAAGCCGCCTGTGATCATCACACGCGAGAGCGCCAACACGCTCCGAGCTCATATCTTGGAGGTTTCTGGTGGATGCGACGTGTTCGAGGCGGTCGCCGCCTACGCACGGCGGCGTCAACGAGGGATCTGTGTGTTGAGTGGGAGTGGGATTGTGAATAATGTTAGCTTGCGGCAGCCGGCGGCGGCGGGGTCGGTGTTGACGCTGCAAGGGAGGTTCGAGATTTTGTCGCTTTCGGGATCTTTCCTGCCTCCGCCTGCTCCGCCCGGTGCTACCAGTCTCACGATCTTCTTGGCCGGAGGACAAGGACAAGTGGTGGGAGGGAATGTGGTGGGAGCTTTGATCGCGTCGGGGCCAGTCATCGTCATAGCATCGTCGTTTAGTAACGTTGCTTACGAGAGGTTGCCGTTGGATGAAGAAGAATTGCCGATGCAGGCGGCTGGTGGTGACGGTGACGGAGGGGACGGTGGCGGCGACGTCCACAACAACCCTTTTCCTGATGCAGCATCCGGTTTGCCCTTTCTAAATCTGCCTATGAACATGCCCAATCAGAATCAATTTTTCGGTTGA 780 57.44 MATLNLGSASHFVDQLQQRPDLHLETPPNSDHVTNLNHFNGSGGGGGGSGGSGDLMIRRPRGRPAGSKNKMKPPVIITRESANTLRAHILEVSGGCDVFEAVAAYARRRQRGICVLSGSGIVNNVSLRQPAAAGSVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGNVVGALIASGPVIVIASSFSNVAYERLPLDEEELPMQAAGGDGDGGDGGGDVHNNPFPDAASGLPFLNLPMNMPNQNQFFG 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6308804 6309909 - Hsped.03g04220.1 Hepe03g0422 565420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0422 259 CDD DUF296 86 169 IPR005175 -
Hepe03g0422 259 MobiDBLite consensus disorder prediction 213 235 - -
Hepe03g0422 259 MobiDBLite consensus disorder prediction 35 71 - -
Hepe03g0422 259 Pfam Plants and Prokaryotes Conserved (PCC) domain 86 198 IPR005175 -
Hepe03g0422 259 SUPERFAMILY AF0104/ALDC/Ptd012-like 82 215 - -
Hepe03g0422 259 ProSiteProfiles PPC domain profile profile. 82 218 IPR005175 -
Hepe03g0422 259 Gene3D - 85 216 - -
Hepe03g0422 259 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 44 220 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Hepe03g0422 259 FunFam AT-hook motif nuclear-localized protein 85 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0422 Hepe-Chr3:6308804 Hepe06g1763 Hepe-Chr6:68737986 3.50e-95 dispersed
Hepe03g0422 Hepe-Chr3:6308804 Hepe05g1836 Hepe-Chr5:68663914 4.00e-107 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0422 - - - 0.0