Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0445 ATGGATGGGCCAACTGGTCGTGGTGGCAGTGGCATGGATATGAATTTACCGAACTATAAGCTTGGAAAAACCCTTGGCATTGGTTCATTTGGGAAAGTGAAAATTGCAGAGCATGCTTTAACTGGTCATAAAGTTGCTATTAAGATCCTTAACCGCCGGAAAATAAAAAACTTGGACATGGAAGAAAAAGTGAGAAGAGAGATTAAAATATTGAGATTGTTCATGCATCCTCACATTATACGGCTCTATGAGGTTATAGAGACTCCAGCAGACATTTATGTTGTGATGGAGTATGTAAAATCTGGAGAGCTCTTTGACTATATTGTAGAAAAGGGAAGGTTGCAGGAAGATGAAGCCCGTAATTTTTTTCAACAGATAATCTCTGGTGTGGAGTACTGCCACAGGAATATGGTGGTTCATAGAGATCTTAAGCCTGAGAATTTGCTTTTAGACTCCAAATGTAATGTGAAGATTGCTGATTTTGGTTTGAGCAATATAATGCGTGATGGTCACTTTCTGAAGACAAGTTGTGGGAGTCCCAATTATGCTGCCCCAGAGGTCATCTCTGGGAAATTATACGCTGGACCTGAAGTAGATGTGTGGAGTTGTGGTGTTATTTTGTATGCTCTTCTATGTGGCACTCTTCCTTTTGACGATGAAAACATTCCCAACCTGTTTAAGAAAATAAAGGGTGGAATCTATACTCTTCCAAGTCATTTATCATCTGGTGCTAGAGAACTGATTCCTAGTATGCTGGTGGTTGACCCAATGAAGCGCATCACAATCCCTGAGATTCGACAACACCCATGGTTTCAGGCTCATCTTCCACGCTATTTAGCCGTGCCTCCACCTGATACAATGCAACAAGCAAAAAAGATTGACGAGGACATTCTTCAGGAGGTTGTAAAGATGGGATTTGACAGAAATCAGCTGGTGGAGTCTCTTCGTAATCGAATTCAAAATGAGGCTACTGTTGCTTATTATTTGTTGCTGGACAACCGGTTCCGTGTTTCTAGTGGTTATCTTGGAGCTGAGTTTCAGGAAACTATGGAAACAGGATTCAACCGTATGCACTCTGGTGAACCCGCAAGTCCTGCTGTAGGACACCGTCTTCCTGGATATATGGATTATCAAGGAATGGGCTTACGATCACAGTTTCCGGTTGAGAGGAAGTGGGCTCTGGGATTACAGTCTCGAGCTCATCCCCGTGAAATTATGACCGAAGTTCTTAAAGCCCTACGAGAGCTCAATGTGGGTTGGAAGAAGATTGGGCACTACAATATGAAATGTAGGTGGTTACCTGGAATTCCAGGCCATCATGAAGGCATGATTAATAGCCCTGGGCATGGTAATCATTACTTTGGGGACGAGTCTACCATCATTGAAAACGATGGCGTCGTAAAATCGCCGAATGTTATTAAGTTTGAAGTTCAGCTCTACAAAACACGCGAAGAGAAGTATTTGCTTGATCTACAGAGGGTTCAAGGCCCCCAGTTTCTTTTCCTGGATCTTTGTGCTGCCTTCCTTGCACAGCTCCGAGTCCTTTAA 1548 42.89 MDGPTGRGGSGMDMNLPNYKLGKTLGIGSFGKVKIAEHALTGHKVAIKILNRRKIKNLDMEEKVRREIKILRLFMHPHIIRLYEVIETPADIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSSGARELIPSMLVVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEDILQEVVKMGFDRNQLVESLRNRIQNEATVAYYLLLDNRFRVSSGYLGAEFQETMETGFNRMHSGEPASPAVGHRLPGYMDYQGMGLRSQFPVERKWALGLQSRAHPREIMTEVLKALRELNVGWKKIGHYNMKCRWLPGIPGHHEGMINSPGHGNHYFGDESTIIENDGVVKSPNVIKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6716682 6723825 + Hsped.03g04450.1 Hepe03g0445 565443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0445 515 CDD UBA_SnRK1_plant 293 333 - -
Hepe03g0445 515 SUPERFAMILY Protein kinase-like (PK-like) 16 288 IPR011009 -
Hepe03g0445 515 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524(InterPro)
Hepe03g0445 515 Pfam UBA/TS-N domain 293 329 IPR015940 -
Hepe03g0445 515 Gene3D Kinase associated domain 1, KA1 395 513 - -
Hepe03g0445 515 Gene3D Transferase(Phosphotransferase) domain 1 11 350 - -
Hepe03g0445 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe03g0445 515 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 292 332 IPR015940 -
Hepe03g0445 515 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 18 291 - GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Hepe03g0445 515 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 466 514 IPR001772 -
Hepe03g0445 515 SUPERFAMILY KA1-like 328 514 IPR028375 -
Hepe03g0445 515 SUPERFAMILY UBA-like 281 330 IPR009060 GO:0005515(InterPro)
Hepe03g0445 515 ProSiteProfiles Protein kinase domain profile. 19 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe03g0445 515 CDD AMPKA_C 389 512 - -
Hepe03g0445 515 FunFam Non-specific serine/threonine protein kinase 395 513 - -
Hepe03g0445 515 CDD STKc_AMPK_alpha 16 271 - -
Hepe03g0445 515 Pfam Kinase associated domain 1 472 514 IPR001772 -
Hepe03g0445 515 FunFam Non-specific serine/threonine protein kinase 10 349 - -
Hepe03g0445 515 SMART serkin_6 19 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe03g0445 515 FunFam Non-specific serine/threonine protein kinase 9 98 - -
Hepe03g0445 515 SMART uba_6 294 331 IPR015940 -
Hepe03g0445 515 Pfam Protein kinase domain 19 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0445 Hepe-Chr3:6716682 Hepe07g1747 Hepe-Chr7:59864705 9.91e-83 dispersed
Hepe03g0445 Hepe-Chr3:6716682 Hepe02g2055 Hepe-Chr2:49273026 1.39e-220 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72643 PF00069 Pkinase 2.60E-80 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0445 K07198 - csv:101211720 999.964