Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0460 ATGACCCACACCCATAGAATTTCCCAACATCAAATCCCACGTAGCGAGAGCACGATGAGTGGCGGCGGTGGCGGTGGCGGTGGCGGTAGCGGACCTTGCGGCGCGTGCAAGTTTTTGAGGAGAAAATGTGTGAAAGGTTGCATTTTTGCGCCATATTTCGACTCGGACCAAGGCACGGCCCACTTCGCGGCCGTGCATAAGGTGTTTGGAGCTAGCAATGCCTCCAAGATCCTCCTTCGCATCCCGCCTCCCAAGCGTCTCGACGCTTGCGTTACTCTTTGTTACGAGGCTCTCGCTAGGGTTCGAGACCCTGTCTATGGTTGCGTTGCCCATATCTTCTCCCTTCAGCAACAGGTAGTGAATTTGCAGGCAGAGTTAGCATACATTCAGGCCAAACTCTCCACCTTGCAACGCCTATTACCGCCGCCGCTACACAGTCCGTCGCCAAACGCTTGCCACCCTCCGCTCCCGGAAACGATACCGGGCTCCGACATGAGCTTGCTGTCTAACGTTCCAATGCTCCTTGACCCCCTGCAAACGCAGCTAGCTTTTAATGAAACCACAAATAGCTTTCTGAACCCAATTGATCATCATCAAGAGATGGATGAAGATGGTGATCTTCAATCTTTGGCTCGAGAGTTCGTTTCGAGGTATTGGCCCGGCGTAAGATTCCGGCCGCCGTGCTCTCACATTTAA 696 53.59 MTHTHRISQHQIPRSESTMSGGGGGGGGGSGPCGACKFLRRKCVKGCIFAPYFDSDQGTAHFAAVHKVFGASNASKILLRIPPPKRLDACVTLCYEALARVRDPVYGCVAHIFSLQQQVVNLQAELAYIQAKLSTLQRLLPPPLHSPSPNACHPPLPETIPGSDMSLLSNVPMLLDPLQTQLAFNETTNSFLNPIDHHQEMDEDGDLQSLAREFVSRYWPGVRFRPPCSHI 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6986410 6989662 - Hsped.03g04600.1 Hepe03g0460 565458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0460 231 MobiDBLite consensus disorder prediction 1 18 - -
Hepe03g0460 231 Pfam Lateral organ boundaries (LOB) domain 32 130 IPR004883 -
Hepe03g0460 231 PANTHER LOB DOMAIN CONTAINING PROTEIN 29 151 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Hepe03g0460 231 ProSiteProfiles LOB domain profile. 31 133 IPR004883 -
Hepe03g0460 231 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0460 Hepe-Chr3:6986410 Hepe06g1935 Hepe-Chr6:70569932 5.60e-44 dispersed
Hepe03g0460 Hepe-Chr3:6986410 Hepe03g0462 Hepe-Chr3:7030470 4.15e-52 proximal
Hepe03g0460 Hepe-Chr3:6986410 Hepe05g1877 Hepe-Chr5:69076213 2.34e-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55225 PF03195 LOB 3.80E-36 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0460 - - - 0.0