Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0462 ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGAGGGCCGGCAACCGCCAGCGCCGGCCTCGGCGGCAGTGCCGGCGGAGGCCCATGTGGTGCCTGTAAGTTCTTGAGAAGAAAGTGTGTTCCCGGTTGCATATTCGCCCCTTATTTCGACTCCGAGCAAGGCGCTGCTCACTTTGCGGCGGTCCACAAGGTGTTCGGAGCTAGCAACGTCTCGAAACTCCTCCTTCATATCCCGGTCCACAAGCGTCTCGACGCTGTCGTCACGATTTGCTACGAGGCTCAAGCTCGCCTTCGAGACCCCGTCTATGGCTGTGTTGCTCATATATTCGCTCTTCAACAACAGGTGGTGAGTTTACAAGCCGAGCTGTCGTACCTTCAAGCCCATTTAGCAACACTGGAGCTGCCGTCGCCGCAGCACCCGCCCCTGCCACCTCCGCCGCCAAATTTTCCGGTGCAACCACAGCTCTCCATCTCAGACCTGCCGTCGGCCTCCTCCTTGCCGGCCACTTACGACTTGTCGTCGCTCTTTGACCCAATGGCTCAGCCTGCATGGGCCATGCAACAGCAGCGGCTCGACCACCGCCAGTTCGCCGGCGGCGGCGGCGGCGGCGGCTCGTCCACTGCAGTCGGAGAGGGCGACCTTCAAGCATTGGCCCGTGAACTCCTCCATAGACATGGCGCTACGCCGTGCTCCGATCCCTCCTCGCCGTCGCTATCTAAATGA 723 61.27 MSANPSTSGGGGPATASAGLGGSAGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVSLQAELSYLQAHLATLELPSPQHPPLPPPPPNFPVQPQLSISDLPSASSLPATYDLSSLFDPMAQPAWAMQQQRLDHRQFAGGGGGGGSSTAVGEGDLQALARELLHRHGATPCSDPSSPSLSK 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7030470 7035329 + Hsped.03g04620.1 Hepe03g0462 565460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0462 240 ProSiteProfiles LOB domain profile. 27 129 IPR004883 -
Hepe03g0462 240 Pfam Lateral organ boundaries (LOB) domain 28 126 IPR004883 -
Hepe03g0462 240 MobiDBLite consensus disorder prediction 194 213 - -
Hepe03g0462 240 MobiDBLite consensus disorder prediction 136 152 - -
Hepe03g0462 240 PANTHER LOB DOMAIN CONTAINING PROTEIN 24 174 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Hepe03g0462 240 MobiDBLite consensus disorder prediction 135 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0778 Hepe-Chr1:71310361 Hepe03g0462 Hepe-Chr3:7030470 7.90e-45 dispersed
Hepe03g0462 Hepe-Chr3:7030470 Hepe05g1877 Hepe-Chr5:69076213 5.08e-65 dispersed
Hepe03g0460 Hepe-Chr3:6986410 Hepe03g0462 Hepe-Chr3:7030470 4.15e-52 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55226 PF03195 LOB 1.90E-38 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0462 K21994 - csv:101220603 357.836