Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0476 ATGGTGAGAGGGAAAACGCAGATGAGGCTAATAGAAAACGCGACGAGCCGGCAAGTAACCTTCTCGAAGAGGAGAAATGGATTGATGAAGAAAGCGTTTGAGTTATCGGTTCTCTGTGATGCTGAGGTTGCTCTTATCATCTTCTCCCCTAGAGGAAAGCTTTATGAATTTGCTAACTCAAGCATGCAGGCAACTATAGAGCGATATCGAAAGCATGCAAAAAACAAAGAAGCCCTTGATCCTCCATCTGTTAATAATTTGCAGTTGGAGCATCTGAATCATGAAGAAGCAGCAAGCCTAATGAAGAAAATAGATCAACTTGAAGTTTCAAAACGGAAAATGTTGGGAGAAGATCTGGGATCTTGCTCCATGGATGAACTTCAACAGCTTGAACATCAGTTGGAGAAAAGTGTCTGCAAAATTAGAGCCAGAAAGATAGAAGTGTTTGAAGAACAGATTAAACAACTAAGGGAAAAGGAGAAAGACTTGGAAGATGAAAATGCTAAGCTACTTCAAAAGTGGGAAAGTGAGCCAAATGGAGGAGTAAATGAAGTAGAAAGAGCAGAGAATTTGTTAAACTATGCAGAAAGTAGCAGCCCAAGTTCAGAAGTGGAAACAGAGTTGTTCATTGGGCCACCTGAAACAAGGCCCAAAAGATATATTTCCCTTAATTAA 675 40.3 MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFANSSMQATIERYRKHAKNKEALDPPSVNNLQLEHLNHEEAASLMKKIDQLEVSKRKMLGEDLGSCSMDELQQLEHQLEKSVCKIRARKIEVFEEQIKQLREKEKDLEDENAKLLQKWESEPNGGVNEVERAENLLNYAESSSPSSEVETELFIGPPETRPKRYISLN 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7287433 7300673 + Hsped.03g04760.1 Hepe03g0476 565474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0476 224 Gene3D - 14 93 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g0476 224 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe03g0476 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g0476 224 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g0476 224 MobiDBLite consensus disorder prediction 196 224 - -
Hepe03g0476 224 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 186 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe03g0476 224 Coils Coil 139 173 - -
Hepe03g0476 224 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g0476 224 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g0476 224 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g0476 224 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g0476 224 FunFam MADS-box transcription factor 1 13 84 - -
Hepe03g0476 224 Pfam K-box region 93 174 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe03g0476 224 SUPERFAMILY SRF-like 3 88 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g0476 224 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Hepe03g0476 224 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0476 Hepe-Chr3:7287433 Hepe05g1897 Hepe-Chr5:69311646 5.14e-67 dispersed
Hepe03g0476 Hepe-Chr3:7287433 Hepe03g0477 Hepe-Chr3:7313329 5.41e-40 tandem
Hepe03g0476 Hepe-Chr3:7287433 Hepe07g0203 Hepe-Chr7:1805681 7.85e-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55227 PF01486 K-box 8.50E-26 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0476 - - - 0.0