Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0477 ATGGGAAGAGGAAGAGTAGAACTGAAGAGAATAGAGAACAAAATCAACCGACAAGTTACGTTCTCGAAACGACGAAATGGACTCCTCAAAAAAGCTTATGAACTCTCGGTTCTGTGCGACGCCGAAGTCGCTTTGATCATCTTCTCCACCCGCGGCAAGCTCTATGAATTTGGTAGTGCAGGTACGACCAAAACATTGGAGCGATACCAACGTTGTTGTTTCTCTCCTCAAGACAATTATACTGAACGAGAAACCCAGAATTGGTTCCAGGAAATATCAAAACTGAAAGCTAAATATGAATCTCTTTGTCGCACTCATAGGCATTTGCTTGGGGAAGATCTTGGACCATTGAGTGTAAAGGAGCTCCAAAATCTTGAAAAGCAACTTGAAGCAGCCCTTGCTCAAGCTAGACAAAGGAAGACTCAGATTATGATTGAACAGATGGAAGACCTGCGCAGAAAGGAGCGTCACCTTGGGGACCTCAACAGAGAGCTTAAGCTCAAGCTTGAGGCAGAGGGACAAAATCTTAAAGCCATCCAAAGTTTTTGGAGCTCTGGCTCTGCAGCTGTTGAACATGGCAACACCTTCCCATTGCATCCTTCACAAGCTAACCCTATCGAATGCCAACACGAACCCGTCTTACAAATCGGGTACCAAAATTATTTCTCAGAAGAGGGGCCATCATCTGTCCAAAAGAGCATGACATGTGAGACAAACTTCATACAAGGATGGGTTATTTGA 741 44.4 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFGSAGTTKTLERYQRCCFSPQDNYTERETQNWFQEISKLKAKYESLCRTHRHLLGEDLGPLSVKELQNLEKQLEAALAQARQRKTQIMIEQMEDLRRKERHLGDLNRELKLKLEAEGQNLKAIQSFWSSGSAAVEHGNTFPLHPSQANPIECQHEPVLQIGYQNYFSEEGPSSVQKSMTCETNFIQGWVI 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7313329 7319581 - Hsped.03g04770.1 Hepe03g0477 565475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0477 246 Coils Coil 119 164 - -
Hepe03g0477 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g0477 246 FunFam MADS-box transcription factor 1 13 85 - -
Hepe03g0477 246 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Hepe03g0477 246 Gene3D - 13 82 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g0477 246 Pfam K-box region 82 169 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe03g0477 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 190 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe03g0477 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g0477 246 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g0477 246 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g0477 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g0477 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g0477 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g0477 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g0477 246 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1645 Hepe-Chr1:81654311 Hepe03g0477 Hepe-Chr3:7313329 6.19e-29 dispersed
Hepe02g1211 Hepe-Chr2:15212649 Hepe03g0477 Hepe-Chr3:7313329 5.85e-37 dispersed
Hepe03g0477 Hepe-Chr3:7313329 Hepe03g1115 Hepe-Chr3:64068623 4.57e-72 dispersed
Hepe03g0476 Hepe-Chr3:7287433 Hepe03g0477 Hepe-Chr3:7313329 5.41e-40 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55228 PF01486 K-box 8.40E-29 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0477 K09264 - csv:101219421 417.157