Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0481 ATGTCCGATCTTCAGAAACAAGAACTCGACGACGACGACGACTCTCCGGCCACCGATCTCCGTATCAACGACTCCTCTCGAATGGACCTTCTTGCCCTTGCTCCCAAGCAGGAGCATCCCGACTCCGACGACGACTCCAGCCTCCCTCGGGTCGTCAAGTTCACGCCGGAGATTTCTAAAACGGTCTCGGCTCTCCCGCCGAAGAGAGCCTCGACGAAGGATCGCCACACCAAGGTCGAGGGCCGCGGCCGGAGGATTCGGATTCCGGCCACCTGTGCGGCGCGTATATTCCAGTTGACTCGAGAGCTCGGCCACAAGTCCGACGGCGAAACCATCCGGTGGCTACTCGAAAGAGCCGAGCCGGCGATCATCGCCGCTACTGGGACTGGTACCATTCCCGCCATTGCCATGTCCGTTAACGGCACTCTCAAGATTCCCACCACCACTTCTTCTTCTAACCAAGATTCCACCGACCAATCCATCGGTAAGAAGCGGCGTAAACGCCCTGCGAACAGTGATTACGTCGACGTAAACGACGCCGTTTCCGTTTCCGTTTCGAACGGAGTCGTTCAGGCCAGTTCCGCCGCCGTGCAACACGCTTTTCCGCCGGGGTTCCTTCCAGTGTGGGCCATCCCATCGAACGCCATAATTCCCGGGGCGGTTTTCATGGTTCCATCCATGGCATGCTCTTCAACCCATCCCCAGTTGTTCTCATTTCAGGCTCCGGTGGCGGCGCCGCTCATTAATACGACGGCACGACCCATTTCCGCCGTCCCGTCGAAGCCAGACACGTCTCACATTCAATCCAGCCCCACCAATCAAAGCTCGAGCACTTCTTGCTCTTCCGCTTCCAAGTCTCAATCCGTCATGGCGCCGATCTCAAGCTCCACCGTCCCGACGACTGGAAAAACGACACAGATGCTTAGAGATTTCTCGTTGGAGATATACGATAAGGAAGAGCTTCAGTTCATGTCTCGCTCCTCCTCAAAACATTAA 996 56.83 MSDLQKQELDDDDDSPATDLRINDSSRMDLLALAPKQEHPDSDDDSSLPRVVKFTPEISKTVSALPPKRASTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTIPAIAMSVNGTLKIPTTTSSSNQDSTDQSIGKKRRKRPANSDYVDVNDAVSVSVSNGVVQASSAAVQHAFPPGFLPVWAIPSNAIIPGAVFMVPSMACSSTHPQLFSFQAPVAAPLINTTARPISAVPSKPDTSHIQSSPTNQSSSTSCSSASKSQSVMAPISSSTVPTTGKTTQMLRDFSLEIYDKEELQFMSRSSSKH 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7455202 7457159 - Hsped.03g04810.1 Hepe03g0481 565479

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0481 331 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 53 281 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Hepe03g0481 331 MobiDBLite consensus disorder prediction 145 173 - -
Hepe03g0481 331 Pfam TCP family transcription factor 71 169 IPR017887 -
Hepe03g0481 331 MobiDBLite consensus disorder prediction 1 17 - -
Hepe03g0481 331 MobiDBLite consensus disorder prediction 1 49 - -
Hepe03g0481 331 MobiDBLite consensus disorder prediction 63 82 - -
Hepe03g0481 331 MobiDBLite consensus disorder prediction 34 49 - -
Hepe03g0481 331 MobiDBLite consensus disorder prediction 159 173 - -
Hepe03g0481 331 MobiDBLite consensus disorder prediction 254 304 - -
Hepe03g0481 331 ProSiteProfiles TCP domain profile. 72 126 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0481 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0481 Hepe-Chr3:7455202 Hepe09g0125 Hepe-Chr9:998999 1.14e-34 dispersed
Hepe03g0481 Hepe-Chr3:7455202 Hepe07g0200 Hepe-Chr7:1767012 9.68e-55 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g2449 . 39 245 TCP Transcription Factor Family AT5G23280 65.2 1.6e-67 253.1
Hepe01g0906 . 114 332 TCP Transcription Factor Family AT5G23280 58.9 2.5e-60 229.2
Hepe03g0481 . 1 330 TCP Transcription Factor Family AT2G45680 50.1 5.0e-70 261.9
Hepe09g0125 . 35 174 TCP Transcription Factor Family AT3G47620 63.0 1.6e-42 171.0
Hepe07g2519 . 103 204 TCP Transcription Factor Family AT3G47620 82.4 3.7e-39 159.8
Hepe10g1486 . 143 234 TCP Transcription Factor Family AT3G47620 84.9 5.9e-37 152.5
Hepe09g0125 . 90 172 TCP Transcription Factor Family AT1G69690 95.2 1.0e-37 154.5
Hepe02g1690 . 42 305 TCP Transcription Factor Family AT3G27010 56.4 8.3e-61 231.1
Hepe03g1140 . 29 261 TCP Transcription Factor Family AT3G27010 52.6 3.7e-53 205.7
Hepe02g2449 . 9 244 TCP Transcription Factor Family AT5G08330 57.7 6.6e-66 247.7
Hepe01g0906 . 114 330 TCP Transcription Factor Family AT5G08330 57.9 6.1e-56 214.5
Hepe09g0277 . 29 123 TCP Transcription Factor Family AT5G60970 78.1 1.1e-37 154.5
Hepe02g0930 . 37 149 TCP Transcription Factor Family AT3G02150 67.5 7.3e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011535 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55229 PF03634 TCP 4.20E-30 No_clan Hepe TF