Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0511 ATGAGTTTTGGGGGTTTCCTCGACGGCGGCGGCGGTGGAGGAGGAGGAGGTGGTGGTGGTGCTCGAATCGTAGCTGATTTGTCTTACGCTAATAACAACAATACTGCCAACCATAGTGGTATCGGCGGCGGCGGCGGAAATATGCCCTCCGGTGGTATCGCTCCGCCGCGTCTAATTACTCAATCTCTCACCAAATCGATGTTCAACTCCCCCGGACTCTCTCTCGCTCTTACGAACATGGACGGCGGGCAGGGGGATTTGGGTGCCCGACTGCCCGAGGGGTTCGAGCATAATGTTGGGAGAAGAGGCAGAGAGGAAGAGCATGAGAGTAGATCTGGAAGTGACAACATGGACGGCGGCTCCGGCGACGACCAGGACGCTGCCGACAACCCTCCGAGGAAGAAGCGTTACCACCGACACACTCCTCAGCAAATCCAAGAGCTCGAAGCTGTTTTTAAAGAGTGCCCACATCCTGATGAGAAGCAAAGGCTCGAGTTGAGTCGGAGGCTTTGTTTAGAAACCAGGCAAGTTAAGTTTTGGTTCCAAAATCGGAGGACCCAAATGAAGACCCAATTGGAACGCCATGAGAATACTTTGCTTAGACAAGAGAATGATAAGCTTAGAGCTGAGAATATGTCGATTCGAGATGCTATGAGGAATCCAATCTGTACGAACTGTGGCGGTCCGGCGATTATCGGAGAGATTTCGCTGGAAGAGCAGCAGTTGAGGATCGACAATGCTCGGTTGAAGGATGAGTTGGACCGGGTTTGTGCGCTAGCCGGGAAGTTTCTCGGCAGACCGATTTCGTCGCTGGCTAACTCCATTGCACCTCCATTGCCGAGCTCGAGTTTGGAACTGGGAGTTGGGAGTAATGGATTTGGAAGTTTGACCATGGCAACGTCAATGGCTCTTGGACCGGATTTTGGAGGTGGGTTGTCGGGGAATCTGGCTGTCGTTCAGGCACCTGCGAGGCCAACGCCAGGGATGGGACTTGATCGGTCGGTTGAGCGATCTATGCTACTGGAGCTTGCTTTGGCTGCCATGGATGAATTGGTTAAAATGGCTCAGACTGACGAGCCTATTTGGATTGGGAGCTTGGAAGGTGGAAGAGAAATACTGAACCAGGAAGAGTACATGAGGACATTCACTCCTTGCATCGGCATGAAGCCGAACGGTTTTGTCACCGAGGCGTCGAGAGAAACTGGCATGGTGATCATCAACAGCTTAGCTCTCGTCGAGACACTGATGGACTCGAATCGATGGGCGGAGATGTTTCCGTGTATGATTGCTCGAACCACAACAACTGATGTGATCTCCGGTGGCATGGGCGGAACGAGGAACGGTTCACTTCAACTGATGCACGCGGAGCTTCAAGTGCTCTCGCCGTTGGTACCGGTCCGGGAAGTCAATTTTCTACGATTCTGCAAGCAGCATGCCGAAGGGGTTTGGGCAGTCGTCGACGTATCGGTCGACGCCATGAGAGAGACTCCAACCGGTGGTTCCTCATTCATCAACTGCAGAAGGCTTCCTTCTGGGTGTGTTGTTCAAGACATGCCCAATGGATATTCCAAGGTTACGTGGGTGGAACATGCGGAGTACGATGATAGCCAAGTCCACCAGCTATATCGGCCCCTTCTCAGCTCCGGTACGGGCTTCGGAGCGCAACGGTGGGTCGCCACCCTTCAACGGCAATGCGAATGCCTTGCCATTCTCATGTCATCTGCCGTACCTATGCGAGATCATACCGCCATAACCGCAGGCGGGAGGCGAAGCATGCTGAAGCTAGCACAACGAATGACAGCCAACTTCTGCGCAGGGGTGTGCGCATCGACAGTGCACAAATGGAACAAGCTGAACACGGGGAGTGTAGACGAGGACGTCCGTGTCATGACACGGAAGAGCGTGGACGACCCCGGGGAGCCACCGGGTATTGTGTTGAGTGCGGCTACGTCGGTGTGGCTACCGGTATCGCCTCAACGACTGTTCGATTTCCTCCGGGACGAGCGGCTAAGGAGCGAATGGGATATCTTATCCAATGGAGGCCCCATGCAGGAAATGGCCCATATTGCCAAAGGGCAAGATCATGGCAACTGCGTCTCTCTATTAAGAGCCAGCGCTATGAATGCAAACCAGAGCAGTATGTTGATTCTACAAGAGACATGCATAGATGCAGCCGGGTCGCTTGTAGTGTACGCGCCGGTGGACATTCCGGCAATGCATGTCGTGATGAACGGCGGCGATTCGGCGTATGTCGCGCTATTGCCGTCGGGGTTTGCTATAGTACCCGACGGGGCGGTGATGACGACGACGACGAATGGGAATAGTCCTAGCGGCGGAGGGGATGGCCCACAGAGCCGAGGCGGTGGTGGGTCCCTCCTCACCGTCGCATTTCAAATCCTCGTGAATAGCCTCCCTACGGCCAAGCTCACCGTAGAATCGGTTGAAACGGTCAACAATCTCATCTCTTGCACCGTTCAGAAGATCAAAGCTGCTCTTCAATGTGAAAACTGA 2511 54.08 MSFGGFLDGGGGGGGGGGGGARIVADLSYANNNNTANHSGIGGGGGNMPSGGIAPPRLITQSLTKSMFNSPGLSLALTNMDGGQGDLGARLPEGFEHNVGRRGREEEHESRSGSDNMDGGSGDDQDAADNPPRKKRYHRHTPQQIQELEAVFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGEISLEEQQLRIDNARLKDELDRVCALAGKFLGRPISSLANSIAPPLPSSSLELGVGSNGFGSLTMATSMALGPDFGGGLSGNLAVVQAPARPTPGMGLDRSVERSMLLELALAAMDELVKMAQTDEPIWIGSLEGGREILNQEEYMRTFTPCIGMKPNGFVTEASRETGMVIINSLALVETLMDSNRWAEMFPCMIARTTTTDVISGGMGGTRNGSLQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSVDAMRETPTGGSSFINCRRLPSGCVVQDMPNGYSKVTWVEHAEYDDSQVHQLYRPLLSSGTGFGAQRWVATLQRQCECLAILMSSAVPMRDHTAITAGGRRSMLKLAQRMTANFCAGVCASTVHKWNKLNTGSVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGAVMTTTTNGNSPSGGGDGPQSRGGGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCEN 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8847067 8852328 + Hsped.03g05110.1 Hepe03g0511 565509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0511 836 Pfam Homeodomain 134 189 IPR001356 GO:0003677(InterPro)
Hepe03g0511 836 Gene3D - 409 554 IPR023393 -
Hepe03g0511 836 MobiDBLite consensus disorder prediction 95 114 - -
Hepe03g0511 836 Coils Coil 185 217 - -
Hepe03g0511 836 Gene3D - 121 207 - -
Hepe03g0511 836 ProSiteProfiles START domain profile. 333 570 IPR002913 GO:0008289(InterPro)
Hepe03g0511 836 ProSiteProfiles 'Homeobox' domain profile. 131 191 IPR001356 GO:0003677(InterPro)
Hepe03g0511 836 SUPERFAMILY Bet v1-like 335 567 - -
Hepe03g0511 836 MobiDBLite consensus disorder prediction 84 141 - -
Hepe03g0511 836 Pfam START domain 342 567 IPR002913 GO:0008289(InterPro)
Hepe03g0511 836 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 112 835 IPR042160 -
Hepe03g0511 836 FunFam Homeobox-leucine zipper protein GLABRA 2 342 566 - -
Hepe03g0511 836 CDD START_ArGLABRA2_like 337 566 - -
Hepe03g0511 836 ProSitePatterns 'Homeobox' domain signature. 166 189 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Hepe03g0511 836 CDD homeodomain 133 191 IPR001356 GO:0003677(InterPro)
Hepe03g0511 836 SMART HOX_1 132 195 IPR001356 GO:0003677(InterPro)
Hepe03g0511 836 SMART START_1 342 567 IPR002913 GO:0008289(InterPro)
Hepe03g0511 836 SUPERFAMILY Bet v1-like 595 829 - -
Hepe03g0511 836 SUPERFAMILY Homeodomain-like 116 191 IPR009057 -
Hepe03g0511 836 FunFam Homeobox-leucine zipper protein HDG1 121 207 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1298 Hepe-Chr1:78181203 Hepe03g0511 Hepe-Chr3:8847067 2.54e-89 dispersed
Hepe02g0212 Hepe-Chr2:2108993 Hepe03g0511 Hepe-Chr3:8847067 9.04e-251 dispersed
Hepe02g1423 Hepe-Chr2:18101679 Hepe03g0511 Hepe-Chr3:8847067 6.75e-169 dispersed
Hepe03g0511 Hepe-Chr3:8847067 Hepe08g0472 Hepe-Chr8:4138873 4.25e-258 dispersed
Hepe02g1055 Hepe-Chr2:13006470 Hepe03g0511 Hepe-Chr3:8847067 3.91e-147 transposed
Hepe07g2556 Hepe-Chr7:70005103 Hepe03g0511 Hepe-Chr3:8847067 6.18e-217 transposed
Hepe03g0511 Hepe-Chr3:8847067 Hepe05g1917 Hepe-Chr5:69520936 1.02e-306 wgd
Hepe03g0511 Hepe-Chr3:8847067 Hepe07g0176 Hepe-Chr7:1574301 4.99e-319 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55236 PF01852 START 9.60E-58 CL0209 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0511 K09338 - csv:101222248 1484.54