Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0533 ATGGCGGCCTCAACAATGGCTCTGTCCTCCCCGTCGCTCGCCGGAAAGGCAGTGAAACTCACTCCCTCCGCCCCGGAGCTTCTCGGCAACGGCAGAGTCAGCATGAGGAAATCCGCCGCCAAATCTGTTTCTTCTGGAAGCCCATGGTACGGACCCGACCGTGTCAAGTATTTGGGCCCATTCTCCGGCGAATCTCCGTCCTACCTCACCGGAGAATTCCCCGGTGACTACGGCTGGGATACTGCCGGACTTTCTGCAGACCCCGAGACCTTCGCCAAGAACCGTGAGCTCGAAGTTATCCACTCCAGGTGGGCTATGCTCGGAGCTCTTGGTTGTGTCTTCCCCGAGCTTCTGTCCCGCAACGGTGTGAAGTTCGGTGAAGCAGTTTGGTTTAAGGCCGGTTCCCAAATCTTTAGCGAAGGTGGGCTTGACTACTTGGGGAACCCAAGCTTGGTTCACGCCCAAAGCATTCTCGCCATTTGGGCCACACAAGTTGTTCTCATGGGGGCTGTCGAGGGATACCGTATTGCCGGTGGCCCACTCGGTGAGATAACCGATCCGATCTACCCAGGTGGGAGCTTTGATCCATTGGGGCTTGCAGATGACCCTGAAGCATTTGCAGAGCTGAAAGTGAAGGAGCTAAAGAATGGAAGATTGGCCATGTTTTCCATGTTTGGTTTCTTCGTTCAGGCCATCGTTACCGGAAAGGGCCCATTGGAGAACCTTGCTGACCACCTTGCTGACCCAGTCAACAACAATGCTTGGGCTTTTGCTACCAACTTTGCTCCCGGAAAATGA 798 55.14 MAASTMALSSPSLAGKAVKLTPSAPELLGNGRVSMRKSAAKSVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFAPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9858236 9859206 + Hsped.03g05330.1 Hepe03g0533 565531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0533 265 Pfam Chlorophyll A-B binding protein 66 232 IPR022796 -
Hepe03g0533 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Hepe03g0533 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Hepe03g0533 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 265 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Hepe03g0533 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0533 Hepe-Chr3:9858236 Hepe07g1785 Hepe-Chr7:60430990 9.38e-190 dispersed
Hepe03g0532 Hepe-Chr3:9768512 Hepe03g0533 Hepe-Chr3:9858236 1.45e-193 tandem
Hepe03g0533 Hepe-Chr3:9858236 Hepe03g0534 Hepe-Chr3:9932796 2.89e-65 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0533 K08912 - rcu:8264152 515.768