Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0547 ATGGATCGAAGGGATCCGATGGCGTTATCGGGTTCGCAATCGTTCTATATGCAGAGGGGAATTAGCAACTCTGGCTCTGGACCACAGGGTATGCGTTCCTCTACTAACCCAAATGTGGCATTTCAAACCAATACTGGTGGTAACAATGTTGGATCAGGGTTGCCAATGGACCCTAACCCTGCAATTTCACCTTATGGTGGCAATGTCGGGGCTCAATCTGGTGGCGGTATCATCACCAGCGAGCCTGCGAAACGGAAGCGAGGTCGGCCTCGTAAGTATGGAACTGAAGGGACTGTGTCTTTGGCACTGTCTCCTTCTCCATCTGCTGCAAATCCAGCCTCTGTAGCTTCCGCTTCTTCCCCGAAGCGGGGAAGGGGACGGCCTCCCGGCTCGGGAAAGAAGCAACAATTAGCTTCTCTTGGGGTTGAAACACTTTCAGGGTCAGCTGGCATGGGTTTTACTCCACATGTTATCACCATTGGAATAGGAGAAGATGTTGGTGCAAAAATTATGTCATTTTCACAGCAGGGACCAAGAGTTGTATGCATCTTGTCAGCAAATGGTGCTGTCTCCACTGTAACTCTTCGTCAGCCTTCGACTTCGGGAGGCACAGTCACATATGAGGGGCGTTTTGAGATAATATGTTTGTCGGGCTCGTATGCTCTTGGAGAAACCGCTGGTTCTAGGAACCGCACTGGTGGTCTGAGTGTCTCCCTTGCCAGCCCTGATGGTCGTGTTATCGGTGGTGGAGTAGGCGGAGCACTAGTCGCAGCAACCCCGGTTCAGGTGATAGTAGGGAGCTTCATGTGGGGCAGTTCAAAGTCAAAGTACAAGAAGAGGGAGTCTATCGAAGGTGTGATAGACTCGGATCATCAGTCGGTAGATCACGCAGTTGCGATCGCGAACGTGCAGCAGAATCAGAATATGACTCCAAACTCCTCGGTTAGTATGTGGCCGTCCTCGCAGTCTCTGGACATGCGCAATGCCCACATGGACATCGATCTGATGCGCGGTTGA 1017 51.62 MDRRDPMALSGSQSFYMQRGISNSGSGPQGMRSSTNPNVAFQTNTGGNNVGSGLPMDPNPAISPYGGNVGAQSGGGIITSEPAKRKRGRPRKYGTEGTVSLALSPSPSAANPASVASASSPKRGRGRPPGSGKKQQLASLGVETLSGSAGMGFTPHVITIGIGEDVGAKIMSFSQQGPRVVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIICLSGSYALGETAGSRNRTGGLSVSLASPDGRVIGGGVGGALVAATPVQVIVGSFMWGSSKSKYKKRESIEGVIDSDHQSVDHAVAIANVQQNQNMTPNSSVSMWPSSQSLDMRNAHMDIDLMRG 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10658728 10662890 - Hsped.03g05470.1 Hepe03g0547 565545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0547 338 CDD DUF296 154 243 IPR005175 -
Hepe03g0547 338 MobiDBLite consensus disorder prediction 1 138 - -
Hepe03g0547 338 FunFam AT-hook motif nuclear-localized protein 1-like 155 285 - -
Hepe03g0547 338 Gene3D - 155 289 - -
Hepe03g0547 338 SUPERFAMILY AF0104/ALDC/Ptd012-like 153 280 - -
Hepe03g0547 338 PRINTS AT-hook-like domain signature 84 94 IPR017956 GO:0003677(InterPro)
Hepe03g0547 338 PRINTS AT-hook-like domain signature 120 131 IPR017956 GO:0003677(InterPro)
Hepe03g0547 338 MobiDBLite consensus disorder prediction 11 52 - -
Hepe03g0547 338 MobiDBLite consensus disorder prediction 99 118 - -
Hepe03g0547 338 SMART AT_hook_2 122 134 IPR017956 GO:0003677(InterPro)
Hepe03g0547 338 SMART AT_hook_2 84 96 IPR017956 GO:0003677(InterPro)
Hepe03g0547 338 Pfam Plants and Prokaryotes Conserved (PCC) domain 155 268 IPR005175 -
Hepe03g0547 338 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 29 321 IPR039605 GO:0003680(InterPro)
Hepe03g0547 338 ProSiteProfiles PPC domain profile profile. 149 290 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2368 Hepe-Chr1:88111624 Hepe03g0547 Hepe-Chr3:10658728 5.16e-72 dispersed
Hepe03g0547 Hepe-Chr3:10658728 Hepe08g1523 Hepe-Chr8:19506738 5.66e-73 dispersed
Hepe03g0547 Hepe-Chr3:10658728 Hepe06g1551 Hepe-Chr6:66230337 1.53e-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0547 - - - 0.0