Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0572 ATGGCTTCTCTCATTGGAAAGCAAACGAGCGTAGGCTGCTTCCTCCTCCTCCTCTTCCTCTCTCTTCCGTCTCTCTCGGTCTCCGTCACCGAAGCCGAAGCATCGTACCTCACCGGTCGTCAGCTCTTGGCGATGAAAGAACATGGAGACCTCCCAGATGACTACAAATATGAACTTGACATTCCTGACACTTTTCCACATGAGAGGTTGAAGAAGGCTTATGTTGCTCTTCAAGCTTGGAAATTGGCCATGTATTCTGACCCTCAGAACCTCACTCTCAATTGGGTTGGGGCTGATGTCTGCTCTTACACTGGCGTTTTCTGTGCTCCGGCGCTTGATGACTCCAACATTCAGGTGGTGGCTGGCATTGATTTGAACCATGGTGACATTGCTGGCTATTTGCCTCCTGAGTTTGGGCTCATGACCGATTTGGCTTTGTTCCATATCAACACCAATAGGTTTTGTGGCATCATTCCTCATAGTTTTTCTAAGCTCATTCTCATGTTTGAGTTTGATGTCAGTAACAATCGCTTTGTCGGCCATTTTCCCGAGGTTGTCCTCGAATGGCCCATTGCTAAGTTCCTCGATTTAAGGTACAATGATTTCGAAGGTGAAATCCCGTGGGAGCTCTTCACGAAGGTGTTCGACGCCATTTTCTTGAACAATAACAGATTCTCGTCGTGCATCCCGGAGAGCATAGGAAACTCGAGCGTCTCCGTTGTGTCGTTTGCCAACAACGAGTTCACGGGCTGCATTCCGAAATCCATCGGACAAATGTCGAACCTCAACCAGATCCTCTTTACCGGGAACAAGCTTAGCGGGTGTTTCCCACCGGAGATGGGTAAGTTGGTCAATCTGACGGTGTTCGATGCGAGCTGCAATCAGTTCGTCGGGGAGTTTCCATCAACGCTGTCGGGAATGCAGAATTTGGAGATTATTGATGTCAGTAACAATGAATTGAGGGGGTCTGTTTCTGATGGGTTATGCAAATTGCCCAAATTGGCAAACTGCACTTTCTCGTTTAATTATTTTAATGGGGAAGATTCAGGGTGTGTTTGGACCGAAGGATCAGACAAACTTTTTGATGATATTCAAAATTGTTTGACGAATCGTCCCGAGCAGAGAAAACCAGAACAATGTAGCTCTGTTGTGAATAAACAGGTGGATTGTGGCAACTGCGGCGGTGGTAGCGCTGATACCGGTTATCCGGGAGTTCCAGCAACTCCTGAGGATCCATTTGATCAATCTCCGTCGCCGAGATACAGGTCGCCACCACCTCCGGTTAGCACTCCACCTACCCCAATTGACACCTCTGTCCCGGAACAACACAGGACTCCACCTTCCCAAGTTCCACCTTCCCCGGTGCCTTCCACTGAAGCCCAGACCCCGACCCCGACCCCGGTGCCTTCCACTCAGACCCCGACCCCGGTGCCTTCCACTCAGACCCCGACCCCGGTGCCTTCCACTGAGGCCCAGACCCCGGTTCCATCCACTGAAGCCCAGACCCCGGTTCCATCCACTGAAGCCCAGACCCCGATGCCATCCACTGAAGCCCAGACCCCGATGCCATCCACTGAAGCCCAGACCCCGATGCCATCCACTGAAGCCCAGTCCCCGATGCCATCCACTGAAGCCCAGTCCCCGATGCCATCCACTGAAGCCCAGTCCCCGATGCCATCCACGGAAGCCCAGTCCCCGATGCCTTCCACTGAAGCCCAGTCCCCGATGCCTTCCACTGAAGCCCAGTCCCCGATGCCTTCCACTGAAGCCCAGTCCCCGATGCCTTCCACTGAAGCCCAGTCCCCGATGCCTTCCACTGAAGCCCAGTCCCCGATGCCTTCCACTGAAGCCCAGTCCCCGATGCCTTCCACTGAAGCCCAGTCCCCGATGCCTTCCACTGAAGCCCAGTCCCCCATGCCTTCCACCGAAGCCCAGTCCCCCATGCCTTCCACCGAAGCCCAGTCCCCCATGCCTTCCACCGAAGCCCAGTCCCCCATGCCTTCCACCGATGCCCAGTCACCCATGCCTTCCACCGATGCCCAGTCCCCCATGCCTTCCACCGATGCCCAGTCCCCCATGCCTTCCACCGATGCCCAGTCCCCCATGCCTTCCACCGATGCACAGTCCCCCATGCCTTCCACCGATGCACAGTCCCCCATGCCATCCACCGATGCCCAGTCCCCCATGCCCTCCACCGATGCTCAGTCCCCCATGCCCTCCACCGATGCTCAGTCCCCCATGCCCTCCACCGATGCACAGTCCCCCATGCCCTCCACCGATGCACAGTCCCCCATGCCCTCCACCGATGCACAGTCCCCCATGCCCTCCACCGATGCACAGTCCCCCATGCCCTCCACCGATGCACAGTCCCCCATGCCCTCCACCGATGCACAGTCCCCTATGCCCTCCACCGATGCACAGTCCCCTATGCCCTCCACCGATGCACAGTCCCCTATGCCCTCCACCGATGCACAGTCCCCTATGCCCTCCACCGATGCACAGTCCCCTATGCCCTCCACCGATGCACAGTCCCCTATGCCTTCCACCGATGCACAGTCCCCTATGCCTTCCACCGATGCACAGTCCCCTATGCCTTCCACCGATGCACAGTCCCCTATGCCTTCCACCGATGCACAATCCCCTATGCCTTCCACCGATGCACAATCCCCTATGCCTCCGGTTTTCTCTCCCCCACCTCCCGTCCAGTCTCCACCACCACCGGTCTCCTCTCCACCACCACCGACTGCATCTCCACCACCACCAGTCTACTCTCCACCACCACCAACTGCATCTCCACCACCACCAGTCTACTCTCCACCACCACCGACTGCATCTCCACCACCACCAGTCTACTCTCCACCACCACCAACTGCATCTCCCCCACCACCACCAGTCTACTCTCCACCACCACCAACTGCATCTCCCCCACCACCACCAGTTTACTCTCCCCCACCACCAGTTTACTCTCCCCCACCACCAGTCTACTCCCCACCACCACCAGTCTCATCTCCCCCACCACCGGTCTACTCTCCCCCACCACCGACTGCATCTCCCCCACCACCAGTCTACTCTCCCCCACCACCGACTGCATCCCCCCCACCACCGGTCTACTCTCCACCACCACCGACTGCATCTCCACCACCACCGGTCTACTCTCCCCCACCACCGACTGCATCTCCACCACCACCGGTCTACTCTCCACCACCACCAGTCTCATCTCCACCACCACCGACTGCATCTCCTCCTCCTCCTCCCGGTGCTTCTCCACCTCCAGCATTCGAGGACGTCATCCTCCCACCAAATATCGGTTTCCAATATGCATCGCCACCTCCACCACAGTTTCCTGGCTACTGA 3354 57.13 MASLIGKQTSVGCFLLLLFLSLPSLSVSVTEAEASYLTGRQLLAMKEHGDLPDDYKYELDIPDTFPHERLKKAYVALQAWKLAMYSDPQNLTLNWVGADVCSYTGVFCAPALDDSNIQVVAGIDLNHGDIAGYLPPEFGLMTDLALFHINTNRFCGIIPHSFSKLILMFEFDVSNNRFVGHFPEVVLEWPIAKFLDLRYNDFEGEIPWELFTKVFDAIFLNNNRFSSCIPESIGNSSVSVVSFANNEFTGCIPKSIGQMSNLNQILFTGNKLSGCFPPEMGKLVNLTVFDASCNQFVGEFPSTLSGMQNLEIIDVSNNELRGSVSDGLCKLPKLANCTFSFNYFNGEDSGCVWTEGSDKLFDDIQNCLTNRPEQRKPEQCSSVVNKQVDCGNCGGGSADTGYPGVPATPEDPFDQSPSPRYRSPPPPVSTPPTPIDTSVPEQHRTPPSQVPPSPVPSTEAQTPTPTPVPSTQTPTPVPSTQTPTPVPSTEAQTPVPSTEAQTPVPSTEAQTPMPSTEAQTPMPSTEAQTPMPSTEAQSPMPSTEAQSPMPSTEAQSPMPSTEAQSPMPSTEAQSPMPSTEAQSPMPSTEAQSPMPSTEAQSPMPSTEAQSPMPSTEAQSPMPSTEAQSPMPSTEAQSPMPSTEAQSPMPSTEAQSPMPSTEAQSPMPSTDAQSPMPSTDAQSPMPSTDAQSPMPSTDAQSPMPSTDAQSPMPSTDAQSPMPSTDAQSPMPSTDAQSPMPSTDAQSPMPSTDAQSPMPSTDAQSPMPSTDAQSPMPSTDAQSPMPSTDAQSPMPSTDAQSPMPSTDAQSPMPSTDAQSPMPSTDAQSPMPSTDAQSPMPSTDAQSPMPSTDAQSPMPSTDAQSPMPSTDAQSPMPSTDAQSPMPSTDAQSPMPPVFSPPPPVQSPPPPVSSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPPVYSPPPPTASPPPPPVYSPPPPVYSPPPPVYSPPPPVSSPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPVSSPPPPTASPPPPPGASPPPAFEDVILPPNIGFQYASPPPPQFPGY 1117
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11211999 11215442 - Hsped.03g05720.1 Hepe03g0572 565570

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0572 1117 MobiDBLite consensus disorder prediction 410 434 - -
Hepe03g0572 1117 SUPERFAMILY L domain-like 82 348 - -
Hepe03g0572 1117 FunFam Leucine-rich repeat receptor protein kinase EMS1 233 326 - -
Hepe03g0572 1117 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 13 541 IPR051582 -
Hepe03g0572 1117 MobiDBLite consensus disorder prediction 484 885 - -
Hepe03g0572 1117 MobiDBLite consensus disorder prediction 401 1117 - -
Hepe03g0572 1117 Pfam Leucine rich repeat N-terminal domain 76 108 IPR013210 -
Hepe03g0572 1117 Pfam Leucine Rich Repeat 309 331 IPR001611 GO:0005515(InterPro)
Hepe03g0572 1117 FunFam Leucine-rich repeat extensin-like protein 1 74 232 - -
Hepe03g0572 1117 PRINTS Proline rich extensin signature 450 466 - -
Hepe03g0572 1117 PRINTS Proline rich extensin signature 468 485 - -
Hepe03g0572 1117 PRINTS Proline rich extensin signature 427 448 - -
Hepe03g0572 1117 PRINTS Proline rich extensin signature 415 427 - -
Hepe03g0572 1117 PRINTS Proline rich extensin signature 487 512 - -
Hepe03g0572 1117 Gene3D Ribonuclease Inhibitor 72 357 IPR032675 -
Hepe03g0572 1117 MobiDBLite consensus disorder prediction 445 483 - -
Hepe03g0572 1117 MobiDBLite consensus disorder prediction 886 1096 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0572 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1724 Hepe-Chr1:82427178 Hepe03g0572 Hepe-Chr3:11211999 1.03e-70 dispersed
Hepe02g0129 Hepe-Chr2:1454145 Hepe03g0572 Hepe-Chr3:11211999 1.04e-34 dispersed
Hepe03g0572 Hepe-Chr3:11211999 Hepe08g2577 Hepe-Chr8:67536518 5.26e-37 dispersed
Hepe03g0572 Hepe-Chr3:11211999 Hepe09g0745 Hepe-Chr9:7134047 2.46e-42 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g0745 . 56 228 Leucine-rich Repeat extension Gene Families AT1G62440 68.8 5.1e-43 173.3
Hepe02g0129 . 55 381 Leucine-rich Repeat extension Gene Families AT1G62440 57.2 7.2e-37 152.9
Hepe08g2577 . 64 233 Leucine-rich Repeat extension Gene Families AT1G62440 65.9 3.6e-36 150.6
Hepe09g0745 . 16 411 Leucine-rich Repeat extension Gene Families AT4G13340 73.0 1.3e-67 255.0
Hepe08g2577 . 30 415 Leucine-rich Repeat extension Gene Families AT4G13340 73.1 1.1e-63 241.9
Hepe01g1724 . 16 218 Leucine-rich Repeat extension Gene Families AT4G13340 69.3 1.5e-39 161.8
Hepe03g0572 . 20 225 Leucine-rich Repeat extension Gene Families AT4G13340 55.3 2.2e-38 157.9
Hepe02g0129 . 54 382 Leucine-rich Repeat extension Gene Families AT4G13340 60.6 8.2e-38 156.0
Hepe05g1580 . 44 371 Leucine-rich Repeat extension Gene Families AT4G13340 65.3 2.0e-36 151.4
Hepe09g0745 . 19 410 Leucine-rich Repeat extension Gene Families AT3G24480 70.7 3.3e-72 269.6
Hepe08g2577 . 26 411 Leucine-rich Repeat extension Gene Families AT3G24480 71.1 7.2e-67 251.9
Hepe02g0129 . 54 382 Leucine-rich Repeat extension Gene Families AT3G24480 58.2 2.2e-39 160.6
Hepe01g1724 . 16 218 Leucine-rich Repeat extension Gene Families AT3G24480 64.1 3.7e-39 159.8
Hepe03g0572 . 24 225 Leucine-rich Repeat extension Gene Families AT3G24480 50.7 4.8e-39 159.5
Hepe05g1580 . 40 370 Leucine-rich Repeat extension Gene Families AT3G22800 68.4 8.1e-52 201.8
Hepe02g0129 . 54 381 Leucine-rich Repeat extension Gene Families AT3G22800 61.7 8.1e-44 175.3
Hepe09g0745 . 68 396 Leucine-rich Repeat extension Gene Families AT3G22800 61.0 1.3e-38 157.9
Hepe09g0745 . 42 400 Leucine-rich Repeat extension Gene Families AT5G25550 61.5 1.0e-40 164.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000785 1 2 1 1 0 5 5 5 5 1 2 5 5 4 2 4 4 4 3 4 4 3 2 4 3 3 5 2 2 1 92