Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe03g0577 | ATGGGTTTTCCGGTGGGTTGCACGGAGGTCTTCTTCCCCACCTTATTCCTCCACTTCCTCTCCCTCCTCGACTTCCTCAAACACCTAATTCATTCCCTCTTCCGCCTCCTCTCCCTGCCGGAATTCCTCCACTCCGACCCCTTCTCGCCGGAGCTCCGATTCCCACTCAACCCGCCCCCCTCCGCCGTCCTCCTCCGCGAATTCCTCCCCGTCGTCAAATTCTCCGACCTCCCCCAGCTGGACCCACCGGAGAGCTGCGCCGTCTGCCTGTACGAGTTCGAAGGGGCGGAGGAGATCCGGTGGCTGACCAACTGCAAGCACATTTTCCACAGGGGGTGTCTGGACCGTTGGATGGATCATGATCATAAGACGTGTCCGCTTTGTAGAACGCCGTTTGTGCCTGATGGAATGATGGAGGAATTCAATCAACGCCTCTGGGCCGCCTCTGGGATCGCTGAGTTTGATTCTGAGTTCAACTCGGTTTTAGGTTAG | 492 | 57.72 | MGFPVGCTEVFFPTLFLHFLSLLDFLKHLIHSLFRLLSLPEFLHSDPFSPELRFPLNPPPSAVLLREFLPVVKFSDLPQLDPPESCAVCLYEFEGAEEIRWLTNCKHIFHRGCLDRWMDHDHKTCPLCRTPFVPDGMMEEFNQRLWAASGIAEFDSEFNSVLG | 163 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 11369784 | 11370275 | - | Hsped.03g05770.1 | Hepe03g0577 | 565575 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe03g0577 | 163 | ProSiteProfiles | Zinc finger RING-type profile. | 86 | 129 | IPR001841 | - | |
| Hepe03g0577 | 163 | SMART | ringv_2 | 85 | 129 | IPR011016 | GO:0008270(InterPro) | |
| Hepe03g0577 | 163 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 66 | 135 | IPR013083 | - | |
| Hepe03g0577 | 163 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 10 | 140 | - | - | |
| Hepe03g0577 | 163 | SUPERFAMILY | RING/U-box | 85 | 135 | - | - | |
| Hepe03g0577 | 163 | Pfam | Ring finger domain | 85 | 129 | IPR001841 | - | |
| Hepe03g0577 | 163 | SMART | ring_2 | 86 | 128 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe03g0577 | Hepe-Chr3:11369784 | Hepe08g0373 | Hepe-Chr8:3353296 | 1.71e-15 | dispersed | |
| Hepe03g0577 | Hepe-Chr3:11369784 | Hepe05g1963 | Hepe-Chr5:70105817 | 1.89e-40 | wgd | |
| Hepe03g0577 | Hepe-Chr3:11369784 | Hepe06g1524 | Hepe-Chr6:65926316 | 4.46e-54 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe03g0577 | K16281 | - | csv:101220424 | 264.618 |