Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0632 ATGGAGAACACAGCAGCCCACAGCCGCCGTGTGCTGTTGGTAACATACTGTGCTCAAGGACACATCAACCCCGCTCTCCAATTCGCCAAGCGCCTCACGCGCCGCGGTGTCGATGTCACCTTCCTCACCTCTCTCTCCGCCTACCGCCGTATCGGCAAAACCCCGACGCTCCCACGTCTCTCCTTCGCCTCCTTCTCCGATGGCTACGACGATGGTTTCAAATCAGGCGACGACATCAACCATTGCATGTCGGAACTCGAGCGCCATGGATCTCGAGCTGTTAACGATATGATTACGGCGAGTACGGGCCAACCCTTCACTTGCATCGTGTATTCCATACTCCTCCCTTGGGTGGCTACGGTGGCGCATTCCCTCCACCTCCCGTCGATTCTTCTCTGGATTCAACCCGCCGTCGTTTTCGCTTTGTACTACTATTACAACAATGGTTACCATGATGCAATTCAGAGCATGTTCGATGATCCGAGCTCGAAGAACATTCAACTACCTGGGCTGCCATTGTTGGCGGGTCGTGACCTTCCATCGTTTTTTGGTTCTTCAGACGTTTATGACTTTGCACTCCCAATATTTACGAGGCAATTTGAATTACTCGAGCAAGAGACCAACCCAAAGGTTCTAGTTAACACATTTGACGAATTGGAGCACGATGCGTTGAGAGCGATTAGCAAGTTCCATTTGATACCAATCGGACCTTTGATTCCATCTGCTTTTCTTGATGGAAAAGACACATTAGAAGCCTCTTCTAGATGCGATCTTTTCCAATGTACTACCAGTTATATTGAGTGGTTGAACTCAAAACCTAAAGCATCGGTAATTTACGTATCATCCGGAAGCATTTCGACATTATCAAAGCAACAAAAAGAGGAGATAGCAAGAGGGTTGCTAAGCTGTGGACGACCATTTTTGTGGGTTATGCGAGACATTGAAGAACAAGACACGTTAAGCTGTAGAGAGGAAGTAGAAGCTGTAGGGAAGATAGTTCCATGGTGTTCACAGCTCGAAGTTCTATCGAGCCCTGCGACCGGATGTTTTCTAACGCACTGTGGATGGAATTCTTGTTTGGAGAGTCTGGTTTGCGGGGTTCCGACGGTGGCGTTTCCGCAATGGACGGATCAAGGGACAAATGCGAAGATCATTCGAGACTTGTCGGGGACCGGAGTGAGGGTGGAGGTGTCCATAGATGGCGAGGTTAAGCGAGAGGAGATAATTAGGTGCTTGGAGATGGTGATGGGAGATTCAAAGAAAGGGGAAGAGATAAGGAGAAACGCTATGAAATGGAAGGAGTTGGCTAAGGAAGCTGCTAGCGATGGTGGTTCATCAGATGCTAACTTCAAGGCTTTCATGGATCAAGTTTGTTCTTAG 1380 48.7 MENTAAHSRRVLLVTYCAQGHINPALQFAKRLTRRGVDVTFLTSLSAYRRIGKTPTLPRLSFASFSDGYDDGFKSGDDINHCMSELERHGSRAVNDMITASTGQPFTCIVYSILLPWVATVAHSLHLPSILLWIQPAVVFALYYYYNNGYHDAIQSMFDDPSSKNIQLPGLPLLAGRDLPSFFGSSDVYDFALPIFTRQFELLEQETNPKVLVNTFDELEHDALRAISKFHLIPIGPLIPSAFLDGKDTLEASSRCDLFQCTTSYIEWLNSKPKASVIYVSSGSISTLSKQQKEEIARGLLSCGRPFLWVMRDIEEQDTLSCREEVEAVGKIVPWCSQLEVLSSPATGCFLTHCGWNSCLESLVCGVPTVAFPQWTDQGTNAKIIRDLSGTGVRVEVSIDGEVKREEIIRCLEMVMGDSKKGEEIRRNAMKWKELAKEAASDGGSSDANFKAFMDQVCS 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12957521 12960331 - Hsped.03g06320.1 Hepe03g0632 565630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0632 459 ProSitePatterns UDP-glycosyltransferases signature. 335 378 IPR035595 -
Hepe03g0632 459 CDD GT1_Gtf-like 10 441 IPR002213 GO:0008194(InterPro)
Hepe03g0632 459 Gene3D Glycogen Phosphorylase B; 14 450 - -
Hepe03g0632 459 FunFam Glycosyltransferase 14 255 - -
Hepe03g0632 459 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 6 457 - -
Hepe03g0632 459 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 11 450 - GO:0080043(PANTHER)|GO:0080044(PANTHER)
Hepe03g0632 459 Gene3D Glycogen Phosphorylase B; 253 438 - -
Hepe03g0632 459 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 267 431 IPR002213 GO:0008194(InterPro)
Hepe03g0632 459 FunFam Glycosyltransferase 256 438 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0632 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0622 Hepe-Chr3:12558413 Hepe03g0632 Hepe-Chr3:12957521 2.90e-164 dispersed
Hepe03g0623 Hepe-Chr3:12591705 Hepe03g0632 Hepe-Chr3:12957521 6.41e-158 dispersed
Hepe03g0632 Hepe-Chr3:12957521 Hepe05g1314 Hepe-Chr5:61303158 8.55e-129 dispersed
Hepe03g0632 Hepe-Chr3:12957521 Hepe03g0634 Hepe-Chr3:13012806 2.78e-131 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1051 . . . . . . . . Cmo08g00838 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g02119 . . . Hepe03g0632 . Lcy13g0892 Cla07g01594 Cam07g1691 Cec07g1787 Cco07g1749 Clacu07g1674 Cmu07g1641 Cre07g2015 Lsi09g01618 . . Cme11g02216
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002292 1 2 2 2 2 2 0 2 2 1 2 2 2 1 2 4 2 8 2 2 1 3 1 1 1 2 1 1 1 8 63