Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0639 ATGACTGCAATTTCATCCAACTCTGATTTATGGATATCTGTTACACACTTTTATTTATGTGTGTTTGTGTTCGTGTTTTCTTTTACTTTTGTAAGTTGTAAAAATTTACTTGGTGTGTATTTTTCATACGATGGAAAAGTTGAATTGAAGAAGCAAAGTTCTTGTTCCTTGCAATTGACCAACAAAACGGACAAATATGTTGTCTTCAAGGTTAAAACCACCAATCCCAAGAAGTACTGTGTTCGTCCTAATGCTGGAATCATTTTGCCTAGTAGTGCAAGCAATATTACAGTTACCATGCAAGCTCCAAAGGAGGCGCCTCCTGATATGCAGTGCAAGGATAAGTTTTTAATTCAAAGTGCTGTAGCACCAGATGGTACAACAGCAAAGGACATTAGTGCAGAATTGTTTAACAAGGCAGATGGTAAAGTAGTAGATGAGTATAAGATGAGGGTTGTTTACATTTTTGCAAATCCTCCATCCCCTGTTCCAGAAGGATCTGAAGAAGGATCTCCTCCCAGGAGTGCAGTTGAAGATGGAAACCAAAATATTGCATTGTTTGATGCTGTTTCAAGATCTCTGGAGGAGCCTAAAGAGAAACCATCACAGGTATCGTCTACCGTTTCGAAGTTAAACGAGGAGAAAGCTTCTGCTTTGCAACAGAATCAGAAGCTACGTCAGGAGCTGGAACTTCTGAAGAAAGAATCGAGCGGAAGGCAGGGTGGTGGCTTCTCTGTATTGTTTGTGGTGCTAATCGGTCTCATCGGAGTTCTGATCGGTTACTTGGTGAAGAAAACATAG 801 40.2 MTAISSNSDLWISVTHFYLCVFVFVFSFTFVSCKNLLGVYFSYDGKVELKKQSSCSLQLTNKTDKYVVFKVKTTNPKKYCVRPNAGIILPSSASNITVTMQAPKEAPPDMQCKDKFLIQSAVAPDGTTAKDISAELFNKADGKVVDEYKMRVVYIFANPPSPVPEGSEEGSPPRSAVEDGNQNIALFDAVSRSLEEPKEKPSQVSSTVSKLNEEKASALQQNQKLRQELELLKKESSGRQGGGFSVLFVVLIGLIGVLIGYLVKKT 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13210025 13221865 + Hsped.03g06390.1 Hepe03g0639 565637

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0639 266 Pfam MSP (Major sperm protein) domain 48 139 IPR000535 -
Hepe03g0639 266 MobiDBLite consensus disorder prediction 160 179 - -
Hepe03g0639 266 Gene3D Immunoglobulins 37 157 IPR013783 -
Hepe03g0639 266 MobiDBLite consensus disorder prediction 200 219 - -
Hepe03g0639 266 Coils Coil 208 235 - -
Hepe03g0639 266 FunFam Vesicle-associated protein 1-1 39 158 - -
Hepe03g0639 266 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 48 263 IPR016763 GO:0005789(InterPro)|GO:0005789(PANTHER)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER)
Hepe03g0639 266 PIRSF VAMP_assoc_prot 45 265 IPR016763 GO:0005789(InterPro)
Hepe03g0639 266 MobiDBLite consensus disorder prediction 192 219 - -
Hepe03g0639 266 SUPERFAMILY PapD-like 48 167 IPR008962 -
Hepe03g0639 266 ProSiteProfiles Major sperm protein (MSP) domain profile. 30 155 IPR000535 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0639 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0639 Hepe-Chr3:13210025 Hepe06g1669 Hepe-Chr6:67728407 3.75e-58 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g368 . . . . . . . . . . Cma06g01460 Cma14g01647 Car06g01260 Car14g01480 . Cpe08g00218 Cpe03g01391 Bhi01g00928 Tan10g0943 . . . . . . . . . . . . . . . . Lsi05g01497 . . Cme06g00685 . . Bda11g00542 . . Bpe13g00647 . Bma06g01519 Sed01g4000 Cmo06g01461 Cmo14g01691 . . . . . . Bhi12g02125 Tan06g1925 Cmetu09g0227 Lac12g1461 Hepe03g0639 . Lcy13g0912 . . . . . . . . Csa03g01409 Chy06g00652 .
Vvi5g986 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed01g4000 . . . . . . . . Bhi12g02125 Tan06g1925 Cmetu09g0227 Lac12g1461 Hepe03g0639 . Lcy13g0912 . . . . . . . Lsi09g01624 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000979 4 2 2 4 4 2 3 2 2 2 2 2 3 2 2 4 2 6 4 2 2 3 2 2 2 2 2 6 3 3 83