Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0643 ATGAAGGCCATGCCCTTTCCTTTGCCCTTTGAAGACCTTCGTTCTAATGGCCTTTTGAATTTCACTTCTCTTTCTGATTCTCCACCACCGCCGCATCTCCGCCCTCACAACTGGAGTTTCAGTCTGCAGAAACAAATTTGCTATGTGGGTGCTGCTGAACCCACCTCTGTTCTCGACACTCGTAGAAGCCCAACCCCAAGCCCTCCTACTTCCACTTCCACCCTGTCTTCCTCTCTCGGCGGCGGCGGTGGCGCTGGGGCTACCGCCTCCACCGACACTACTCTCACTGAAAACCCTTCTCCTTTAGACAAATGCGGAGGCGGCCTTGGGATTGATGATTGGGACAGCGTTTTGCCGGAATCCCCTGGCCAAGGTCCCTCCATTCTTGGGTTGATTATGGGCGATGTTGAAGACCCATCTCTCGGATTGAATAAGCTGTTGCAGGGCGGCGGAGGCGGCGGTGGTGTTGCTGCTGCTGCTGCTGGTGGTTCTCATCTGGACTTGGAATTTTCCGGGGGGTTTTCCGGTGTGGATCATGGGTTCGTCTTTGAACCCAATACTCTCACCGGTGAATCCATTGTGGACCCATCTGGCTCCGATTTCCACAATGGGGGGAGACTCACCGCCGCTGCGGTGTCCAACACGAACACCATGTTTTCCGGCTTGTTTCAGAATCAAAATCAGATGATGGACGGCGTTGATGAGAAGCCACAGATTTTCAATTCTTCCCACCAAGTTGTGATGAATCAGAATCAAAATCAAACCCAGTTCACTCAGAATCCAGCTATGTTTATGTCTCTGCCTTACACCTCACCTGTTCAAGATCACCATCAGAACCACCACCACCAGAATCTCCTCGGTCCACCGCCCGCTAAGCGGTTCAATTGCGGTTCGATTGGGGCTAATAATAATTATCCAGTGAAATCCCCATTTCAGGATTCGGGTCAAGAAATGTTCAATCGTAGACAACAACACGTCCAACAAGTTCAGTTGTTTCCTCATCATCACCAGCAGCAACAGCAGCAGCAGCAGAGGGCTTCAATGGCGGCCATGGCGAAACAGAAAATGGTGAACGAAGAAATGGCAAATCAACAGCTCCAACAGGGAATTTCCGACCAGCTATTCAAGGCAGTAGAGCTGATCGAAACAGGGAACTCCGTTCTCGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCTTCCCCAATTGGGAAGCCCTTTCAAAGGGCAGCTTTCTACTTCAAGGAGGCTTTGCAAATGCTCCTTCATCAAAACCCTTCACCCAATAATCCATTGTCTTCCCCTTTTAGCATCATTTTCAAGATCGCTGCTTACAAATCTTTCTCTGAGCTCTCCCCTGTTCTTCAGTTTGCTAATTTCACCTCTAACCAAGCCCTCCTCGAGGCCTTCAACGGCTTCGATCGCATTCACATCATCGACTTCGATATCGGATATGGGGGCCAATGGGCTTCATTGATGCAGGAGCTTGCGTTGTTGAGGAATGGCGGAAATGGCGGTTCCCCGCCGTTTCTGAAAATCACTGCCTTTGCTGATGATGATGACTTCGAGCTTGGTTTCACTCAAGAGAACCTAAAGAATTTTGCAAATGAAGTTAATATTGGGTTTGAGCTTGAAGTTGTGAATGTGGAGTGTTTGAATTCAGGTTCTTGGCCTTTGCCACTTAATGTTTCTGAGAACGAAGCGATTGCGGTGAATCTCCCGGTTGGTTCGTTCTTTAATTACTACTACAACTCGGTTTCGTTGCCGATGGTTCTCCGTTTTGTGAAGCATCTTTCCCCAAAAATCGTGGTATGTGTGGACCGAGGGTGCAACCGAATGGATGCGCCATTCCCCAACCGTGTAATGAATGCCCTTGAATCTTACTCGGGTTTGCTTGAATCTATGGATGGTGTTAATGTGAATATTGATACCCAACTGAAGATTGAGAGGTACTTGCTGCAACCGGGTATTGAGAAACTCGTCATGAGTCGTCGTCACAGTTCAAACGAAAGGTTGCCTCCATGGAGATCTCTGTTTTTATCTTCCGGGTTCTCCCCATTGACATTCAGTAACTTCACTGAGTCGCAGGCCGAGTGTCTGCTGCACCGGACGCCTCTTCAGGGATTCCAGATTGACAAGAGGCAGTCGTCACTTGTTTTATGCTGGCACCGAAAAGAGCTCGTCTCGATCTCGGCTTGGAGGTGTTGA 2211 49.39 MKAMPFPLPFEDLRSNGLLNFTSLSDSPPPPHLRPHNWSFSLQKQICYVGAAEPTSVLDTRRSPTPSPPTSTSTLSSSLGGGGGAGATASTDTTLTENPSPLDKCGGGLGIDDWDSVLPESPGQGPSILGLIMGDVEDPSLGLNKLLQGGGGGGGVAAAAAGGSHLDLEFSGGFSGVDHGFVFEPNTLTGESIVDPSGSDFHNGGRLTAAAVSNTNTMFSGLFQNQNQMMDGVDEKPQIFNSSHQVVMNQNQNQTQFTQNPAMFMSLPYTSPVQDHHQNHHHQNLLGPPPAKRFNCGSIGANNNYPVKSPFQDSGQEMFNRRQQHVQQVQLFPHHHQQQQQQQQRASMAAMAKQKMVNEEMANQQLQQGISDQLFKAVELIETGNSVLAQGILARLNHQLSSPIGKPFQRAAFYFKEALQMLLHQNPSPNNPLSSPFSIIFKIAAYKSFSELSPVLQFANFTSNQALLEAFNGFDRIHIIDFDIGYGGQWASLMQELALLRNGGNGGSPPFLKITAFADDDDFELGFTQENLKNFANEVNIGFELEVVNVECLNSGSWPLPLNVSENEAIAVNLPVGSFFNYYYNSVSLPMVLRFVKHLSPKIVVCVDRGCNRMDAPFPNRVMNALESYSGLLESMDGVNVNIDTQLKIERYLLQPGIEKLVMSRRHSSNERLPPWRSLFLSSGFSPLTFSNFTESQAECLLHRTPLQGFQIDKRQSSLVLCWHRKELVSISAWRC 736
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13525600 13528576 + Hsped.03g06430.1 Hepe03g0643 565641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0643 736 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 346 734 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Hepe03g0643 736 MobiDBLite consensus disorder prediction 58 100 - -
Hepe03g0643 736 ProSiteProfiles GRAS family profile. 361 735 IPR005202 -
Hepe03g0643 736 MobiDBLite consensus disorder prediction 57 100 - -
Hepe03g0643 736 Pfam GRAS domain family 372 735 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0643 Hepe-Chr3:13525600 Hepe06g1136 Hepe-Chr6:60381166 2.08e-148 dispersed
Hepe03g0643 Hepe-Chr3:13525600 Hepe07g0684 Hepe-Chr7:8018653 4.67e-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55242 PF03514 GRAS 1.70E-95 CL0063 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0643 K27747 - csv:101214718 994.571