Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0666 ATGGAGTTGGATGGCATCGAAGGTGTGCCATCCATGGATGTGATGGACGAGGAGGATAAGACCCTTCAACGTCACTGTCAATTTCCTTCGGTTTCTAAGCCTCGAATCAACAACAATAACGACAATCCCACTACTACAAGTGTCCACGAGCTTCTTGAATGTCCCGTTTGCACCAATTCTATGTATCCCCCAATTCATCAGTGTCCCAATGGACATACCCTTTGTTCTTCATGTAAAACGAGGGTAGACAACCGTTGCCCGACGTGCAGACAAGAGCTCGGCGATATCAGATGTCTAGCATTAGAAAAAATAGCCGAATCTCTTAAACTGGCTTGTAAATTCTGCACATTCGGGTGCCCGGAGATACTGCCTTACTACAGTAAACTCAAACATGAATCTGCCTGTTACTTTAGACCATATACCTGCCCTTATGCTGGATCAGACTGTCCAGTTGATGGGGATATTCCTTGCCTTGTTTCTCATCTTCGGGACGATCACAAAGTCGACATGCATTCTGGATGCACATTTAATCATCGTTATGTAAAGGCTAATCCATGCGAAGTTGAAAACGCTACCTGGATGCTAACTGTCTTCCACTGTTTTGGCCAGTATTTCTGTCTTCATTTTGAAGCCTTTCAGCTGGGTATGGCACCGGTTTACATGGCGTTTCTCCGATTCATGGGCGACGAATCAGACGCCCGAAACTACAGTTACAGCCTCGAGGTCGGGGGAAATGGCAGGAAGCTCATATGGGAGGGAAACCCTCGAAGCATTCGGGACAACCACAAGAAAGTCAGAGACAGCCACGACGGCCTTATTATACAACGAAACATGGCGCTCTTCTTTTCAGGGGGAGAAAGGAAAGAGCTGAAGCTGCGGATCACGGGACGGATTTGGAAAGAACAAAATAAACAGTAA 918 46.51 MELDGIEGVPSMDVMDEEDKTLQRHCQFPSVSKPRINNNNDNPTTTSVHELLECPVCTNSMYPPIHQCPNGHTLCSSCKTRVDNRCPTCRQELGDIRCLALEKIAESLKLACKFCTFGCPEILPYYSKLKHESACYFRPYTCPYAGSDCPVDGDIPCLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDESDARNYSYSLEVGGNGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRIWKEQNKQ 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15246960 15250430 + Hsped.03g06660.1 Hepe03g0666 565664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0666 305 CDD Sina 168 296 - -
Hepe03g0666 305 CDD RING-HC_SIAHs 52 90 - -
Hepe03g0666 305 SUPERFAMILY RING/U-box 48 94 - -
Hepe03g0666 305 SUPERFAMILY TRAF domain-like 107 299 - -
Hepe03g0666 305 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 39 297 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Hepe03g0666 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 162 IPR013083 -
Hepe03g0666 305 Pfam Sina, TRAF-like domain 198 295 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Hepe03g0666 305 FunFam E3 ubiquitin-protein ligase SINAT3 104 162 - -
Hepe03g0666 305 FunFam E3 ubiquitin-protein ligase SINAT5-like 163 295 - -
Hepe03g0666 305 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 168 295 IPR008974 GO:0005515(InterPro)
Hepe03g0666 305 ProSiteProfiles Zinc finger RING-type profile. 54 90 IPR001841 -
Hepe03g0666 305 ProSiteProfiles Zinc finger SIAH-type profile. 107 167 IPR013010 GO:0008270(InterPro)
Hepe03g0666 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 97 IPR013083 -
Hepe03g0666 305 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 54 89 IPR049548 -
Hepe03g0666 305 Pfam Sina, zinc finger 103 178 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0666 Hepe-Chr3:15246960 Hepe07g0062 Hepe-Chr7:572045 3.21e-182 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0666 K04506 - csv:101209363 634.409