Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0670 ATGGCGATTTACGAGCAGAATCTGGAGGAGTCTTCGTTTCCCAAAGGTGAGGATCTGTATGAGGAACTATGGAAGGCTTGTGCAGGTCCTCTTGTTGAAGTTCCTCTCAATGGAGAAAGGGTTTTTTACTTCCCTCAGGGTCACATGGAACAATTGGAAGAGTCAACAAATGAGGAGCTCAATCACCAAATCCCTCATTTTGATCTCCCTCCCAAGATCCTCTGTCGTGTAGTTAACATTCGTTTGTTGGCTGAAAAGGAAACAGATGAAGTCTATGCTCAAATCACTTTACACCCAGAAGCAGATCAAAGTGAGCCGCAAAGGCTTGATCCAGAGCCGCCTGAGCGTACAAAGCAAACTGTTCATTCTTTTTGTAAGATTTTGACTGCTTCTGATACTAGCACTCATGGAGGCTTCTCAGTTCTTAGAAAACATGCCACTGAATGCCTTCCTCCTCTTGATATGAGTCAATCCACCCCAACTCAGGAGTTAGCTGCTAAGGATCTTCATGGGTATGAGTGGAAATTTAAGCATATTTTCAGAGGTCAACCGCGGAGGCATTTGCTAACTACTGGGTGGAGTACGTTCGTTACATCGAAACGGCTGGTTGCTGGGGATGCCTTTGTTTTCTTAAGGGGCGACAATGGGGAACTGAGGGTTGGGGTTCGACGGCAGGCTCGACAGCAGAGTTTGATGCCTTCCTCTGTGATATCTAGCCATAGTATGCATCTTGGAGTTCTTGCCACTGCTTCTCATGCTGTTCGTACGAAGACCTATTTTGTTGTGTATTACAAGCCGAGAACTAGCCAATTCATAATCAGCTTAAACAAATACTTGGAAACGGTTAAAAATGGATTCGAAGTGGGGATGCGCTTCAAGATGAGATTTGAAGGAGAGGAATCACCAGAGAGAAGGTTCACTGGTACGATTGTTGGTGTTGGAGATTTATCTCTGCAATGGTCGGATTCTAAATGGCGATCGCTGAAGATTCAATGGGATGAACCTGCTACGATTCAGAGGCCCGAACGAGTTTCCCCATGGGAGATCGAACCCTTTGTACCTTCTGCCTCCTTAAACTTCACTCATCCCCCCATAAAGAGTAAAAGGGCCCGACCCGTCGAGATTCCTCCTCCTGAAATTACTTCCAGTTCGGCTCCTTCGGGTTTTTGGCTTCACGGATCGACAATTTCTCACGAGATACCCCAACTAAGTGGCGCAAATGAAGTTCAAAGCAGCGATAACCAGGTTGTCTGGGCTCTCGGGCAGCGAAAACTCGATGGCAATGTCGATAGCAATAGCAGCCACTGTAATCCAATGGCACATGTAGAAGCCATTTGGCCTTCTCCTCCACTCCTTAATATTTCCCTGAAGCTTTACCAAGATTCAACATGTGAAAGAGAACTTATTCCAAAACATCCTCTTCCCTCTCCTTATTCTCCATCTGTTACTTCAAAGTCTAGCAGTGACCTCATTCAGCATGATCAATTGGAGAAAGGGAATAAACCCGATAGTTCTCTTGGCTGCCGAATATTTGGAATCAATTTGAAAACTAACTCTAGCATTGTCTCGTCCTTGGAGAAAAAGCCGTGTTGCCCAATTACAGAGGTGGCCGATGGTGCCAAAGATCCAGCAGGTGCAGCCGATGCTGGAAACCTCTCACAGCCTTCAAAGGAGCAGCAGCAGGTCGCATTGGAGCTGTCGACAAAGGGAATGCAGACAAAGCACATTTCCAATCTATCGTCGAGAACACGTACAAAGGTACAAATGCAAGGAGTTGCTGTAGGTCGAGCGGTCGACTTAACTACACTTGAAGGGTACAAAGATCTGATAGACGAGCTTGAGAACGTGTTTGAAATAAAAGGAGAACTTCGTGAAATGAACAAATGGTCTGTCGTTTTCACGGACGACGAAAATGACATGATGCTCGTGGGGGACGATCCGTGGCCGGAGTTCTGTAAGATGGTGAAGAGGATCTTTATATATTCAAGTGAAGAAGTGAAGAAGATGAGTAGTAAAAACAAGCTTGTTTCCCCATCATCCTTAGATAGCTTGGATTCAGAGCGCAAGACTGAATCCTAA 2079 45.65 MAIYEQNLEESSFPKGEDLYEELWKACAGPLVEVPLNGERVFYFPQGHMEQLEESTNEELNHQIPHFDLPPKILCRVVNIRLLAEKETDEVYAQITLHPEADQSEPQRLDPEPPERTKQTVHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQSTPTQELAAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGDNGELRVGVRRQARQQSLMPSSVISSHSMHLGVLATASHAVRTKTYFVVYYKPRTSQFIISLNKYLETVKNGFEVGMRFKMRFEGEESPERRFTGTIVGVGDLSLQWSDSKWRSLKIQWDEPATIQRPERVSPWEIEPFVPSASLNFTHPPIKSKRARPVEIPPPEITSSSAPSGFWLHGSTISHEIPQLSGANEVQSSDNQVVWALGQRKLDGNVDSNSSHCNPMAHVEAIWPSPPLLNISLKLYQDSTCERELIPKHPLPSPYSPSVTSKSSSDLIQHDQLEKGNKPDSSLGCRIFGINLKTNSSIVSSLEKKPCCPITEVADGAKDPAGAADAGNLSQPSKEQQQVALELSTKGMQTKHISNLSSRTRTKVQMQGVAVGRAVDLTTLEGYKDLIDELENVFEIKGELREMNKWSVVFTDDENDMMLVGDDPWPEFCKMVKRIFIYSSEEVKKMSSKNKLVSPSSLDSLDSERKTES 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15586492 15590916 + Hsped.03g06700.1 Hepe03g0670 565668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0670 692 CDD B3_DNA 122 224 IPR003340 GO:0003677(InterPro)
Hepe03g0670 692 MobiDBLite consensus disorder prediction 668 692 - -
Hepe03g0670 692 SUPERFAMILY DNA-binding pseudobarrel domain 113 253 IPR015300 -
Hepe03g0670 692 FunFam Auxin response factor 122 226 - -
Hepe03g0670 692 Pfam Auxin response factor 250 329 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Hepe03g0670 692 Pfam B3 DNA binding domain 124 225 IPR003340 GO:0003677(InterPro)
Hepe03g0670 692 Gene3D - 286 357 - -
Hepe03g0670 692 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 672 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Hepe03g0670 692 Pfam AUX/IAA family 575 618 IPR033389 -
Hepe03g0670 692 Pfam AUX/IAA family 628 667 IPR033389 -
Hepe03g0670 692 SUPERFAMILY CAD & PB1 domains 577 658 - -
Hepe03g0670 692 SMART B3_2 124 226 IPR003340 GO:0003677(InterPro)
Hepe03g0670 692 MobiDBLite consensus disorder prediction 97 116 - -
Hepe03g0670 692 FunFam Auxin response factor 285 356 - -
Hepe03g0670 692 ProSiteProfiles PB1 domain profile. 582 674 IPR053793 -
Hepe03g0670 692 Gene3D - 121 226 IPR015300 -
Hepe03g0670 692 FunFam Auxin response factor 577 670 - -
Hepe03g0670 692 ProSiteProfiles B3 DNA-binding domain profile. 124 226 IPR003340 GO:0003677(InterPro)
Hepe03g0670 692 MobiDBLite consensus disorder prediction 469 490 - -
Hepe03g0670 692 Gene3D - 578 670 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0083 Hepe-Chr1:9012192 Hepe03g0670 Hepe-Chr3:15586492 5.70e-209 dispersed
Hepe03g0670 Hepe-Chr3:15586492 Hepe07g0830 Hepe-Chr7:10325207 1.45e-251 dispersed
Hepe03g0670 Hepe-Chr3:15586492 Hepe08g0874 Hepe-Chr8:7925941 6.11e-139 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55245 PF02362 B3 2.10E-21 CL0405 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0670 K14486 - csv:101205805 1184.86