Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0729 ATGGTGCACCTTGCAGTTCATTTGCCATATGAAGCCAAAGTTGTTGGTCCAGTTAGTTACAGTTGGATGTACCCTATCGAGAGAAGTTTAAAGACATTGAAACAATACGTACGGAACAAAGCACGTCCTGAGGGTTCTATAGCGAAAGCCTTCGTAATTAATGAATCAGTTACATTTTGTTCCTTATACCTAAGTGGAATTGAAACGAGATTCATTAGAAATGATGATACAATTCACGAGGATGAAATATGTGGTCATTTCAAAGTGTTTAGACAGAGTGCACGACCATTGGGTGCCCTAACTTTAAGGACATTAACAACAGAGGAGAAACGTACTGCACATTGGTTTGTTTTAAACAATTGTGCTGAAATTGAACAATATCGCAGACAACATTTGAGATTACGTCGGAATGAAGCACGAACGAAGTCTGACTTATCTAAAATACATCAAGAACATTTTCCTAATTGGTTCAAATCTAAGGTTTTGTTTTTGCTTGAGTCAAAAAAGGGGTACGATGATATGTATTCACTAGCGATGGGACCTGGTTCTACGGCACGCTCTTATAGTGGATGCATTGTTAATGGAGTACGGTTCCACAGTATAGAGCTTGATAATCGTCGAAAAACACAAAACAACGGTATCATGGTGCCTGGATTTTCCACGGCCAGTGTTGCAGAGAAGGAAGCCAAATTTGACGCCAAGTTCAAGTCTTGCTACGAAACTTGCGAGAAGGAATGCATTGAAAAAGGCAGTGGCCAAACCTATTGTGAAGTTAAGTGTGATGAAGATTGTGACGAAAAGGAAGTTGCTGTGGCTACTTTCCCTACAAACATATTCATCCTCGCTGGTCAGAGTAACATGGCTGGCCGAGGTGGGGATGAGAAGGATAAATCGGGGAAACTTGTGTGCGATGGGATTGTCCCATCAGAGTCTCAACTCGACCCATCAATCCTACGATTGAACCCTGATCTCCAATGGGAGATGGAAAAAGAGCCTATCCATTTGGGGATTGACATCAACAGGACCGCTGGGATTGGTCCCGCAATGGCATTTGCTCACGAGCTGCAAGCGAAAGTCAGGTCGAAGGCAGGCGTTGCGGGTTTAGTTCCTTGTGCCAGAGGTGGCACTTTAATCGAACAATGGATTAAAAATCCTACAAATCCTAATGCAACTTTTTACCAAAACGTCATTGAACGAATCAAAACATTAGATAAAGAAGGTGGGGTTGTGCGTGCTCTTTTCTGA 1245 42.33 MVHLAVHLPYEAKVVGPVSYSWMYPIERSLKTLKQYVRNKARPEGSIAKAFVINESVTFCSLYLSGIETRFIRNDDTIHEDEICGHFKVFRQSARPLGALTLRTLTTEEKRTAHWFVLNNCAEIEQYRRQHLRLRRNEARTKSDLSKIHQEHFPNWFKSKVLFLLESKKGYDDMYSLAMGPGSTARSYSGCIVNGVRFHSIELDNRRKTQNNGIMVPGFSTASVAEKEAKFDAKFKSCYETCEKECIEKGSGQTYCEVKCDEDCDEKEVAVATFPTNIFILAGQSNMAGRGGDEKDKSGKLVCDGIVPSESQLDPSILRLNPDLQWEMEKEPIHLGIDINRTAGIGPAMAFAHELQAKVRSKAGVAGLVPCARGGTLIEQWIKNPTNPNATFYQNVIERIKTLDKEGGVVRALF 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 19068538 19077131 + Hsped.03g07290.1 Hepe03g0729 565727

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0729 414 Gene3D SGNH hydrolase 276 414 IPR036514 -
Hepe03g0729 414 Pfam Pollen allergen Ole e 6 238 269 IPR015333 -
Hepe03g0729 414 SUPERFAMILY SGNH hydrolase 275 408 - -
Hepe03g0729 414 Pfam Carbohydrate esterase, sialic acid-specific acetylesterase 276 413 IPR005181 -
Hepe03g0729 414 SUPERFAMILY Pollen allergen ole e 6 232 269 IPR036466 -
Hepe03g0729 414 Gene3D Pollen allergen ole e 6 232 275 IPR036466 -
Hepe03g0729 414 PANTHER DUF4216 DOMAIN-CONTAINING PROTEIN 1 225 - -
Hepe03g0729 414 Pfam Domain of unknown function (DUF4218) 1 74 IPR025452 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0729 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0729 Hepe-Chr3:19068538 Hepe05g0973 Hepe-Chr5:42899316 3.91e-124 dispersed
Hepe03g0725 Hepe-Chr3:18620845 Hepe03g0729 Hepe-Chr3:19068538 1.04e-36 proximal
Hepe03g0729 Hepe-Chr3:19068538 Hepe03g0730 Hepe-Chr3:19182224 1.41e-77 tandem
Hepe10g1166 Hepe-Chr10:45779036 Hepe03g0729 Hepe-Chr3:19068538 7.55e-14 wgd
Hepe03g0729 Hepe-Chr3:19068538 Hepe05g1240 Hepe-Chr5:59393739 1.42e-80 wgd
Hepe03g0729 Hepe-Chr3:19068538 Hepe05g1055 Hepe-Chr5:51138710 1.52e-47 wgd
Hepe03g0729 Hepe-Chr3:19068538 Hepe06g0054 Hepe-Chr6:1545859 1.59e-07 wgd
Hepe03g0729 Hepe-Chr3:19068538 HepeContig66g0056 Hepe-ChrContig66:5141906 5.77e-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g715 . Blo12g00972 . Bda03g00197 . Bpe04g00169 Bma04g00150 . . Cmo12g00515 . . . . . . Cpe07g00500 Bhi04g00386 . . . Hepe03g0729 . Lcy13g2109 Cla08g01593 Cam08g2093 Cec08g1674 Cco08g1805 Clacu08g1778 . Cre08g1561 . . . Cone20ag0211 . Csa04g02447 . Cme03g02074 . . . . . Bpe05g00378 . . . . . Cma12g00572 . . . . . . . . . . . . . . . . . . . Lsi08g01499 Csa02g01923 Chy07g00162 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000105 0 1 0 0 0 2 0 3 3 7 6 2 0 2 9 0 1 1 0 4 4 34 76 6 1 1 1 2 11 0 177